View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4392_low_4 (Length: 412)
Name: NF4392_low_4
Description: NF4392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4392_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 38003617 - 38003234
Alignment:
| Q |
14 |
atatgttagcaagttaaattttaagattttgttagaagaatatttggatgggaaaacaaaccacattgtcattatttaaatttgccgtatatatcacacc |
113 |
Q |
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| T |
38003617 |
atatgttagcaagttaaattttaagattttgttagaagaatatttggatgggaaaacaaaccacattgtcattatttaaatttgccgtatatatcacacc |
38003518 |
T |
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| Q |
114 |
actcacaaagatcaattaatatatagtttatcaaaatattaatggtaattaacgagtagcccatgtgatgatggagagactatatgattttgagggaaca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38003517 |
actcacaaagatcaattaatatatagtttatcaaaatattaatggtaattaacgagtagcccatgtgatgatggagatactatatgattttgagggaaca |
38003418 |
T |
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| Q |
214 |
aagtaaaggacacaaacaactaaccacaaaactccatttcaaaggcaccctatgcccttgggttatgaactttctttcatggttcccttcatacgtggta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38003417 |
aagtaaaggacacaaacaactaaccacaaaactccatttcaaaggcaccctatgcccttgggttatgaactttctttcatggttcccttcatacgtggta |
38003318 |
T |
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| Q |
314 |
atggcattttttaatggaaaatgacatcgtgtacacgtcgcattgggtccattagttctgaaaaccccaca-ttctaaaacttg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| |
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| T |
38003317 |
atggcattttttaatggaaaatgacatcgtgtacacgtcgcattgggtccatcagttctgaaaaccccagatttctaaaacttg |
38003234 |
T |
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