View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4392_low_6 (Length: 311)
Name: NF4392_low_6
Description: NF4392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4392_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 86 - 303
Target Start/End: Complemental strand, 2486878 - 2486661
Alignment:
| Q |
86 |
ttgagaatagtggaattgaattggttaattagtcaatgttcttttcaactaccaaaagaagacaaacaaaatagagagcaaagaactcaccctatacact |
185 |
Q |
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| T |
2486878 |
ttgaaaatagtggaattgaattggttaattagtcaatgttcttttcaactaccaaaagaagacaaacaaaatagagagcaaagaactcaccctatacact |
2486779 |
T |
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| Q |
186 |
taaggttgtattgtattcacacaaagtcaatgatgatatttttcaccaataattatgaatccttgaacttgaaggagaggatttatagtccctcatgcac |
285 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2486778 |
taaggttgtattgtattcacacaaagtcaatgatgagatttttcaccaataattatgaatcgttgaacttgaaggagaggatttatagtccctcatgcac |
2486679 |
T |
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| Q |
286 |
aataatgataagaataat |
303 |
Q |
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|||||||||||||||||| |
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| T |
2486678 |
aataatgataagaataat |
2486661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 2486972 - 2486899
Alignment:
| Q |
18 |
agttaattaagagaataaaattgtagaatcattactaatcaaaaaggcatgtataaaagttaattactttgaga |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486972 |
agttaattaagagaataaaattgtagaatcattactaatcaaaaaggcatgtataaaagttaattactttgaga |
2486899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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