View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4392_low_7 (Length: 250)
Name: NF4392_low_7
Description: NF4392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4392_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 41403294 - 41403516
Alignment:
| Q |
16 |
atgcagttacagatgcagaatccctaaaggtatgtttaaagattcatgattatattttatggtcacaccaacaaataaataaaagaattatttagaatta |
115 |
Q |
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| T |
41403294 |
atgcagttacagatgcagaatccctaaaggtatgtttaaagattcatgattatattttatggtcacaccaacaaataaataaaagaa----------tta |
41403383 |
T |
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| Q |
116 |
ttgtattgtatataataattgtggttgaatcaaatataaaatataaatatcaggtaagtcaacatagagaaatatcaaatgctaaaggtcaggctagtag |
215 |
Q |
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| T |
41403384 |
ttgtattgtatataataattgtggttgaatctaatataaaatataaatatcaggtaagtcaacatagagaaatatcaaatgctaaaggtcaggctagtag |
41403483 |
T |
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| Q |
216 |
tgggaatggacttcatcagaagaaagatgtcaa |
248 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
41403484 |
tgggaatgcacttcatcagaagaaagatgtcaa |
41403516 |
T |
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