View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4393_low_2 (Length: 641)
Name: NF4393_low_2
Description: NF4393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4393_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Original strand, 34109757 - 34110379
Alignment:
| Q |
1 |
agaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttccaaggagagatttatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34109757 |
agaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttccaaggagagatttatgat |
34109856 |
T |
|
| Q |
101 |
agagaagagaaaattgctagatccagtagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatattgaaagataggcaggagg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34109857 |
agagaagagaaaattgctagatccagcagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatattgaaagataggcaggagg |
34109956 |
T |
|
| Q |
201 |
ggaggaaattcaagaggttatgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaagagttggttactcggcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34109957 |
ggaggaaattcaagaggttatgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaagagttggttactcggcag |
34110056 |
T |
|
| Q |
301 |
tggtgtgtctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatgacaaagttagaggtaacatgcat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34110057 |
tggtgtgtctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatgacaaagttagaggtaaaatgcat |
34110156 |
T |
|
| Q |
401 |
aatataactctctatctacactttttattgaaagtgtgtatatatgtttgtcgagattgtgtcagatgtctatatatgtgtcggtgcttcataaataatt |
500 |
Q |
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| T |
34110157 |
aatataactctctatctacactttttattgaaagtgtgtatatatgtttgtcgagattgtgtcagatgtctatatatgtgtcggtgcttcataaataatt |
34110256 |
T |
|
| Q |
501 |
cttacctaactaactaacctcgttaagtaactggtgtggttgcatcatgctatttgatattattgagaatcatgataaaatatagttgatgcaacttc-- |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34110257 |
cttacctaactaactaacctcgttaagtaactggtgtggttgcatcatgctatttgatattattgagaatcatgataaaatatagttgatgcaacttctg |
34110356 |
T |
|
| Q |
599 |
-tgttgttgtggagacttcgata |
620 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34110357 |
ttgttgttgtggagacttcgata |
34110379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 396
Target Start/End: Original strand, 34121602 - 34122014
Alignment:
| Q |
2 |
gaagaactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttccaaggagagatttatgata |
101 |
Q |
| |
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|||||||| | |||||||||||| | ||| ||||||||||||||||| || |||||||||| ||||||| ||||||| ||||||||||| || | | || |
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| T |
34121602 |
gaagaacttaaacaagggaaagaggtagttaacaaacactccaaagttccttggtggaaattttgttgtctaccttgcttccaaggagaacttcaagcta |
34121701 |
T |
|
| Q |
102 |
gagaagagaaaattgctagatccagtagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatattgaaagataggcaggaggg |
201 |
Q |
| |
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|||||||||||||||||| || |||| |||||||| ||||||||||||||||| ||||||||| || | | |||||| ||| |||| | ||| || |
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| T |
34121702 |
aggaagagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaagagacactttctatagtgagagatttgaagg-gga |
34121800 |
T |
|
| Q |
202 |
ga----ggaaattcaagaggtt------atgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaagagttggtt |
291 |
Q |
| |
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|| || ||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||| | ||| || ||||||||||| |||| | |
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| T |
34121801 |
gacaattcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggttggatgtgcctctgcatcagttgaagaattgggt |
34121900 |
T |
|
| Q |
292 |
actcggcagtggtgtg---------tctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatgacaaa |
382 |
Q |
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||| | |||| |||| ||||||| ||| ||||| || ||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
34121901 |
gctcagtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaaccactttggctacgttgctatgttgcgatgacaaa |
34122000 |
T |
|
| Q |
383 |
gttagaggtaacat |
396 |
Q |
| |
|
|||| ||||||||| |
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|
| T |
34122001 |
gttataggtaacat |
34122014 |
T |
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