View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4394-Insertion-1 (Length: 784)
Name: NF4394-Insertion-1
Description: NF4394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4394-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 695; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Original strand, 43077994 - 43078760
Alignment:
| Q |
8 |
acatggacaatatcatcattcccaaaggatggtacaattggggtgatcccaaccgtgaaatgtaagtttttccattctcattctcatcttcttatgtatt |
107 |
Q |
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| T |
43077994 |
acatggacaatatcatcattcccaaaggatggtacaattggggtgatcccaaccgtgaaatgtaagtttttc-attctcattctcatcttcttatgtatt |
43078092 |
T |
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| Q |
108 |
ctcttaaattaattaaa-tatgtttgctaaaatcaataacctggttgctttagtaccaacttttccaagtgacatacgcacaaactttgagactcagcag |
206 |
Q |
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| T |
43078093 |
ctcttatattaattaaaatatgtttgctaaaatcaataacctggttgctttactaccaacttttccaagtgacatacgcacaaactttgagactcagcag |
43078192 |
T |
|
| Q |
207 |
catccatcatcatactagaaatgtgagtaaaaaatgtacccaaaaataaaaggtgt--gtaagaatctcatttattgatggagtaagtaaaagactatat |
304 |
Q |
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| T |
43078193 |
catccatcatcatactagaaatgtgagtaaaaaatgtacccaaaaataaaaggtgtgtgtaagaatctcatttattgatggagtaagtaaaagactatat |
43078292 |
T |
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| Q |
305 |
agtttaattagggtaatgtacaaccaggatgaaaagagaccactaccttatttgaattcccactttagcaactctacattacatgtgtgtttggtgcaaa |
404 |
Q |
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| T |
43078293 |
agtttaattagggtaatgtacaaccaggatgaaaagagaccactaccttatttgaattcccactttagcaactctacattacatgtgtgtttggtgcaaa |
43078392 |
T |
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| Q |
405 |
tccatgtgttacctttcaatacacacacaaactcacaaagtgctagaaaaatacactctgaagaataagaaaataaggtagcactttgaagggaaaagaa |
504 |
Q |
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| T |
43078393 |
tccatgtgttaccttccaatacacacacaaactcacaaagtgctagaaaaatacactctgaagaataagaaaataaggtagcactttgaatggaaaagaa |
43078492 |
T |
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| Q |
505 |
tcctgccaacaaaactaattgtttttgtttgcttataaagttatagaaaaaggccttggtcctaagctacctaattctaaattttgatcaattctatatc |
604 |
Q |
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| T |
43078493 |
tcctgccatcaaaactaattgtttttgtttgcttataaagttttagaaaaaggccttggtcctaagctacctaattctaaattttgatcaattctatatc |
43078592 |
T |
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| Q |
605 |
ttatttagctatagacacattggcatgcgcatgtgagtgcgttataatttgatgttgtattttttgttctcattctattctattctattgggtccaccac |
704 |
Q |
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| T |
43078593 |
ttatttagctatagacacattggcatgcgcatgtgagtgcgttataatttgatgttgtattttttgttctc-----attctattctattgggtccaccac |
43078687 |
T |
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| Q |
705 |
cattatcaggactgtattctatggacaatacaaatgcacaggaccaggagcaagctatgcaggggagggtagca |
778 |
Q |
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| T |
43078688 |
cattatcaggactgtattctatggacaatacaaatgcacaggaccaggagcaagctatgca-gggagggtagca |
43078760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 702 - 768
Target Start/End: Complemental strand, 33962541 - 33962475
Alignment:
| Q |
702 |
caccattatcaggactgtattctatggacaatacaaatgcacaggaccaggagcaagctatgcaggg |
768 |
Q |
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| T |
33962541 |
caccactatcaggactgtattctatggacaatacaaatgcacaggacctggagcaagttttgcaggg |
33962475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 33964092 - 33964031
Alignment:
| Q |
10 |
atggacaatatcatcattcccaaaggatggtacaattggggtgatcccaaccgtgaaatgta |
71 |
Q |
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| T |
33964092 |
atggacaatatcatcattcctaaagggtggtataattggggtgatcctaaccgtgaaatgta |
33964031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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