View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4394-Insertion-2 (Length: 750)
Name: NF4394-Insertion-2
Description: NF4394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4394-Insertion-2 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 577; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 121 - 750
Target Start/End: Complemental strand, 37161173 - 37160544
Alignment:
| Q |
121 |
tgtaggtgattacagtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgc |
220 |
Q |
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| T |
37161173 |
tgtaggtcattacagtatttgcagttgtaagagtgattagatccaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgc |
37161074 |
T |
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| Q |
221 |
tgaatatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggtcagtttttt |
320 |
Q |
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| T |
37161073 |
tgaatatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggtcagtttttt |
37160974 |
T |
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| Q |
321 |
ctatacatgtctacttttcattccttaggtaattgtgatttttccaaattcattgtaaatctaagtatacacttaattaattgcaggagtaccggggttt |
420 |
Q |
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| T |
37160973 |
ctatacatgtctacttttcattccttaggtaattgtgatttttccaaattcattgtaaatctaagtatacacttaattaattgcaggagtaccggggttt |
37160874 |
T |
|
| Q |
421 |
gcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgctgtcggtataaatgctggccagc |
520 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37160873 |
gcagcatgggtgggaatagaggtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgctgtcggtataaatgctggccagc |
37160774 |
T |
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| Q |
521 |
tggctaagatccgaggatgtagggtcatcggcagctctggctctgatgataaggtaacctatcatttcttttcnnnnnnnctctatttgaaatcactaga |
620 |
Q |
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| T |
37160773 |
tggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaacctatcatttcttttctttttttctctatttgaaatcactaga |
37160674 |
T |
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| Q |
621 |
tcatggacccgtgcgatgcatgttgggcacaattgtttgaaattgtatatatctaacaatcttcaagcacatccatagtgtgacagaggagaaaacaata |
720 |
Q |
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| T |
37160673 |
tcatggacccgtgcgatgcatgttgggcataattgtttgaaattgtatatatctaacagacttcaagcacatccatagtgtgacagaggagaaaacaata |
37160574 |
T |
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| Q |
721 |
cgtcattaaaaaacatgtaatcttttgcta |
750 |
Q |
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| T |
37160573 |
cgtcattaaaaaatatgtaatcttttgcta |
37160544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 398 - 581
Target Start/End: Complemental strand, 37149762 - 37149579
Alignment:
| Q |
398 |
taattgcaggagtaccggggtttgcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgc |
497 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||| ||||||| | | |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37149762 |
taattgcaggagtacctgggtttgcagcatggttgggaatagaggtactaggaaacccaaagccagcatcaaatgtgttcatatctgctgcatctggtgc |
37149663 |
T |
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| Q |
498 |
tgtcggtataaatgctggccagctggctaagatccgaggatgtagggtcatcggcagctctggctctgatgataaggtaaccta |
581 |
Q |
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| T |
37149662 |
tgttggtatgattgctggtcaacttgctaagatacgaggatgtcgggtcattggcagcactggctctgatgataaggtaaccta |
37149579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 399 - 591
Target Start/End: Complemental strand, 37153722 - 37153530
Alignment:
| Q |
399 |
aattgcaggagtaccggggtttgcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgct |
498 |
Q |
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| T |
37153722 |
aattgcaggagtagcggggtttgcagcatggttgggaatagaggtaataggagatccaaaaccaggatcacatgtattcatatctgctgcatctggtgct |
37153623 |
T |
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| Q |
499 |
gtcggtataaatgctggccagctggctaagatccgaggatgtagggtcatcggcagctctggctctgatgataaggtaacctatcatttcttt |
591 |
Q |
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| T |
37153622 |
gtaggtatgagtgctggccagcttgctaagatccgaggatgtcgggtcatcggaagcacgggctccgatgataaggtgacttatcttttcttt |
37153530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 124 - 311
Target Start/End: Complemental strand, 37150290 - 37150103
Alignment:
| Q |
124 |
aggtgattacagtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgctga |
223 |
Q |
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| T |
37150290 |
aggtgcttacaacatttgcggttgtaagggtaattcgatcgaaggatagtaaatacagtgagggggatatccttttgaatggatatggtctcgttgctga |
37150191 |
T |
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| Q |
224 |
atatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggt |
311 |
Q |
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| T |
37150190 |
gtatagcattgtaccctcttctcatataattagaaaaattgatcctgctaatgggatttcactgtctgattatcttggttctttaggt |
37150103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 134 - 311
Target Start/End: Complemental strand, 37155426 - 37155249
Alignment:
| Q |
134 |
agtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgctgaatatagtatt |
233 |
Q |
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|||||||||| |||||||||| ||| ||||||||||||||||||||| ||| || ||||| ||||||||| |||| | |||||||| ||||||||| |
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| T |
37155426 |
agtatttgcaattgtaagagtaattcgatcaaaggatagtaaatacactgaaggagatatccttttgaatgggaatggttacgttgctgagtatagtatt |
37155327 |
T |
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| Q |
234 |
gtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggt |
311 |
Q |
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| T |
37155326 |
gtaccctcttctgacataatgaggaaaattgatcctgctaatgggatttcactgtcagattatcttggtactttaggt |
37155249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 37161272 - 37161231
Alignment:
| Q |
6 |
cagaaggccttttcatttcacaatatcaacttaatcaggtac |
47 |
Q |
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| T |
37161272 |
cagaaggccttttcatttcacaatatcaacttaatcaggtac |
37161231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 37150543 - 37150504
Alignment:
| Q |
8 |
gaaggccttttcatttcacaatatcaacttaatcaggtac |
47 |
Q |
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| T |
37150543 |
gaaggccttttcattccacaatatcaacttaatcaggtac |
37150504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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