View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4394-Insertion-3 (Length: 748)
Name: NF4394-Insertion-3
Description: NF4394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4394-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 50423976 - 50423508
Alignment:
| Q |
8 |
atattccatcaatccaaacatagtctaatgtttttacgaattaccctacactcttaagtctaaacnnnnnnnnnngaaacggcaaatattattgaaccaa |
107 |
Q |
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| T |
50423976 |
atattccatcaatccaaacatagtctaatgtttttacgaattaccctacactcttaagtctaaacttttttttttgaaacggcaaatattattgaaccaa |
50423877 |
T |
|
| Q |
108 |
aactcacgcaagatgcgacgagccggagaaagaaggaaactacaaggatgccgccttttagcgtaacatcacccaacaaatataagaactaaaaccaggc |
207 |
Q |
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| T |
50423876 |
aactcacgcaagatgcgacgagccggagaaagaaggaaactacaaagatgccgccttttagcgtaacatcacccaacaaatataagaactaaaaccaggc |
50423777 |
T |
|
| Q |
208 |
aagcaccccaagaatctaagattgcgaaagctatgtctttgaaatctagcgatccacaccaaaattcaatcccatagccaagccttataaacaacaggcc |
307 |
Q |
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| T |
50423776 |
aagcaccccaagaatctaagattgcgaaagctatgtctttgaaatctagcgatccacaccaaaattcaatcccatagccaagccttataaacaacaggcc |
50423677 |
T |
|
| Q |
308 |
agcaaccaacaaatcccctaaaacattgcaatacagcagaagctgctgctgaactgtcacaacc--agcagcacatcagcgctgtcagcagaataacagg |
405 |
Q |
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| T |
50423676 |
agcaaccaacaaatcccctaaaacattgcaatacagcagaagctgctgctgaactgtcacaaccatagcagcacatcagcgctgtcagcagaataacagc |
50423577 |
T |
|
| Q |
406 |
acggctgggacgagcctgaccaccaaacagcagcagattaacgcaccagaacttgacggggacaccaac |
474 |
Q |
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| T |
50423576 |
acggctgggacgagcctgaccaccaaacagcagcagattaacgcaccagaacttgacggggacaccaac |
50423508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 503 - 685
Target Start/End: Complemental strand, 50423450 - 50423268
Alignment:
| Q |
503 |
agattaccttggcctcctccacaaactccactcttaagtctaaactaaggcacaataagttctattcacgataatttcacaagatcacacaatcaaatac |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50423450 |
agattaccttggcctcctccacaaactccactcttaagtctaaactaaggcacaataagttctattcacgataatttcacaagatcacacaatcaaatac |
50423351 |
T |
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| Q |
603 |
acatttcacataacattcaataattataattgtcacggtatagataaacactaataataatacgtcattgcacgttgcaatac |
685 |
Q |
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| T |
50423350 |
acatttcacataacattcaataattataattgtcacggtatagataaacactaataataatacgtcattgcacgttgcaatac |
50423268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 4636236 - 4636329
Alignment:
| Q |
83 |
gaaacggcaaatattattgaaccaaaactcacgcaagatgcgacgagccggagaaagaaggaaactacaaggatgccgccttttagcgtaacat |
176 |
Q |
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|||||||||||||||||| | ||||||||| ||||||| || | |||| | |||||||| |||||||||| ||| |||||| |||||||||||| |
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| T |
4636236 |
gaaacggcaaatattattaatccaaaactctcgcaagacgcaaagagcagtagaaagaaagaaactacaaagataccgcctattagcgtaacat |
4636329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 354 - 417
Target Start/End: Original strand, 4636553 - 4636616
Alignment:
| Q |
354 |
tgctgaactgtcacaaccagcagcacatcagcgctgtcagcagaataacaggacggctgggacg |
417 |
Q |
| |
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||||||||||||| || ||||||||||||||||||| |||||||| | ||| || ||||||||| |
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| T |
4636553 |
tgctgaactgtcaaaaacagcagcacatcagcgctgccagcagaagaccagcacagctgggacg |
4636616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 534 - 624
Target Start/End: Complemental strand, 14425864 - 14425772
Alignment:
| Q |
534 |
tcttaagtctaaactaaggcacaataagttctattcacgataatttcacaagatcacacaatcaaatacacat--ttcacataacattcaata |
624 |
Q |
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||||| ||||| ||||| | ||||| | || |||| || ||||||||||||||||||||||| ||||||| || ||||||||| |||||||| |
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| T |
14425864 |
tcttaggtctagactaacgaacaatcaattttattaacaataatttcacaagatcacacaattaaatacatatacttcacataatattcaata |
14425772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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