View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4394-Insertion-4 (Length: 716)
Name: NF4394-Insertion-4
Description: NF4394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4394-Insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 6 - 704
Target Start/End: Complemental strand, 51579358 - 51578659
Alignment:
| Q |
6 |
caagattttcatcaatcacgtcatatatatatagtgtggataaaattggttatttgcttttagcatagattacatgaattcactaaatcttctgatatgc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51579358 |
caagattttcatcaatcacgtcatatatata--gtgtggataaaattggttatttgtttttagcatagattacataaattcactaaatcttctgatatgc |
51579261 |
T |
|
| Q |
106 |
ttgaattttaccatttgacattttcttaatatgcagaaggtgtgcgtgctggattcaaggcagccggcatcggatgcgtgaccagtaccgtgcctactgt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51579260 |
ttgaattttaccatttgacattttcttaatatgcagaaggtgtgcgtgctggattcaaggcagccggcatcggatgcgtgaccagtaccgggcctactgt |
51579161 |
T |
|
| Q |
206 |
acgtaattttttagatggacaaaacttagctgcattttcttaggtgttttttcatttgcttcttgactaaaaataca--nnnnnnnnnnnngctttaaca |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51579160 |
acgtaattttttagatggacaaaacttagctgcattttcttaggtgttttttcatttgcttcttgactaaaaatacattttttttttttttgctttaaca |
51579061 |
T |
|
| Q |
304 |
aacttcnnnnnnnttatggatttgagaaaattatgtatagtttagttaagaaccatatgaatgtccttagatccttaaaggatttatgttctgnnnnnnn |
403 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51579060 |
aacttcaaaaaaattatggatttgagaaaattatgtatagtttagttaagaaccatatgaatgtccttagatccttaaaggatttatgttctgttttttt |
51578961 |
T |
|
| Q |
404 |
nnctctaactacacttatgaaccttatctgttacatatgagctattttttaatgttgagctttacaaaattcacagttggttgcagttaggatgattcca |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51578960 |
t--tctaactacacttatgaaccttatctgttacatatgagctattttttaatgttgagctttacaaaattcacagttggttgcagttaggatgattcca |
51578863 |
T |
|
| Q |
504 |
tggg---gggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctcaacttaaatatgtgttacaagagcacttcgatcactga |
600 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51578862 |
tgggcaaaggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctcaacttaaatttgtgttacaagagcacttcgatcactga |
51578763 |
T |
|
| Q |
601 |
tcagttatatgttatcaaagtcagagagaacttcaatnnnnnnnntgccaccaaatttttaattaataggagtaaaagtgcagcgttgttggtattaatg |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51578762 |
tcagttatatgttatcaaagtcagagagaacttcaataaaaaaaatgccaccaaatttttaattaataggagtaaaagtgtagcgttgttggtattaatg |
51578663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 509 - 570
Target Start/End: Complemental strand, 302591 - 302530
Alignment:
| Q |
509 |
ggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctcaacttaaa |
570 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
302591 |
ggcaaacctcaattataccgctcaggcacttatcatatctgctggtatgatctcgacttaaa |
302530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 303476 - 303433
Alignment:
| Q |
126 |
ttttcttaatatgcagaaggtgtgcgtgctggattcaaggcagc |
169 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
303476 |
ttttcttgaaatgcagaaggtgtgcgtgctggattcaaggcagc |
303433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University