View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4394_high_2 (Length: 306)
Name: NF4394_high_2
Description: NF4394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4394_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 55896035 - 55895750
Alignment:
| Q |
13 |
tggagttctctcttctgattctactcctcaagaacatagccatgaatcttctcaccaaaactccaaggaagtcttggatcttgtttctggtacctcccaa |
112 |
Q |
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| T |
55896035 |
tggagttctctcttctgattctactcctcaagaacatagccatgaatcttctcaccaaaactccaaggaagtcttggatcttgtttctggtacctcccaa |
55895936 |
T |
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| Q |
113 |
gctgcaagtgggattggttcgcgtcaaagaagaagaaatgtaagttcctactgttttaaggatttaattgatatgcactaaaataagaatttttactcat |
212 |
Q |
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| T |
55895935 |
gctgcaagtgggattggttcgcgtcaaagaagaagaaatgtaagttcatactgttttaaggatttaattgatatgcactaaaataagaatttttactcat |
55895836 |
T |
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| Q |
213 |
aactgcttgatcattagaaatatttgacttttaatcaaatctacgttaaaaatcatacatatgaataaaaattcttagagtattat |
298 |
Q |
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| T |
55895835 |
aactgcttgatcattagaaatatttgacttttaatcaaatctacgttaaaaatcatacatatgaataaaaattcttagagtattat |
55895750 |
T |
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Back To:
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Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 1028928 - 1029204
Alignment:
| Q |
13 |
tggagttctctcttctgattctactcctcaagaacatagccatgaatcttctcaccaaaactccaaggaagtcttggatcttgtttctggtacctcccaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1028928 |
tggagttctctcttctgattctactcctcaagaacatagccatgaatcttctcaccaaaactctaaggaagtcttggatcttgtttctggtacctcccaa |
1029027 |
T |
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| Q |
113 |
gctgcaagtgggattggttcgcgtcaaagaagaagaaatgtaagttcctactgttttaaggatttaattgatatgcactaaaataagaatttttactcat |
212 |
Q |
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| T |
1029028 |
gctgcaagtgggattggttcgcgtcaaagaagaagaaatgtaagttcatac----------atttaattgatatgcactaaaataagaatttttactcat |
1029117 |
T |
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| Q |
213 |
aactgcttgatcattagaaatatttgacttttaatcaaatctacgttaaaaatcatacatatgaataaaaattctt-agagtattat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1029118 |
aactgcttgatcattagaaatatttgacttttaatcaaatctacgttaaaaatcatacatatgaataaaaattcttaagagtattat |
1029204 |
T |
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