View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4394_low_3 (Length: 354)
Name: NF4394_low_3
Description: NF4394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4394_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 210107 - 209801
Alignment:
| Q |
18 |
tgcttcagaatatctgaagccaaatgctcctataaagctcctaaattctcatagagaggagtggaaagtttttggcatagagcataatgccagatcatca |
117 |
Q |
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| T |
210107 |
tgcttcagaatatctgaagccaaatgctcctataaagctcctaaattctcatagagaggagtggaaagtttttggcatagagcataatgccagatcatca |
210008 |
T |
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| Q |
118 |
acgcgtaaagcaaagtcaccagccatgcaaataacgcagggatttagtcaattcattagggagaacgatctatcatatggtgactgttgtgtgtatgagc |
217 |
Q |
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| T |
210007 |
acgcgtaaagcaaagtcaccagccatgcaaataacacagggatttagtcaattcataagggagaacgatctatcatatggtgactgttgtgtgtatgagc |
209908 |
T |
|
| Q |
218 |
tgatcgaggagaaccctactatgatagaagtcacgatgtttcgtgtggttgactattgcgattaacaactcatgtacatctagcctccccactataaata |
317 |
Q |
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| T |
209907 |
tgatcgaggagaaccctcctgtgctagaagtcacgatgttttgtgtggttgactattgggattaacaactcatgtacatctagcctccccactataaata |
209808 |
T |
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| Q |
318 |
atgagtc |
324 |
Q |
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||||||| |
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| T |
209807 |
atgagtc |
209801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 206487 - 206374
Alignment:
| Q |
208 |
gtgtatgagctgatcgaggagaaccctactatgatagaagtcacgatgtttcgtgtggttgactattgcgattaacaactcatgtacatctagcctcccc |
307 |
Q |
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| T |
206487 |
gtgtatgagctgatcgag---aaccctcctgtgctagaagtcacgatgtttcatgtggttgactattgcgattaacaactcatgtacatctagcctcccc |
206391 |
T |
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| Q |
308 |
actataaataatgagtc |
324 |
Q |
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| T |
206390 |
actataaataatgagtc |
206374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 221695 - 221617
Alignment:
| Q |
18 |
tgcttcagaatatctgaagccaaatgctcctataaagctcctaaattctcatagagaggagtggaaagtttttggcata |
96 |
Q |
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||||||| | ||||| |||||||||| |||||||||| ||| || ||||||| | ||| ||||| |||||||||||||| |
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| T |
221695 |
tgcttcaaagtatctaaagccaaatgttcctataaagatccaaacttctcatggtgagcagtgggaagtttttggcata |
221617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 221486 - 221438
Alignment:
| Q |
245 |
aagtcacgatgtttcgtgtggttgactattgcgattaacaactcatgta |
293 |
Q |
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| T |
221486 |
aagtcacaatgtttcgtgcggctgactatggcgattaacaacttatgta |
221438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 208 - 324
Target Start/End: Original strand, 6901850 - 6901966
Alignment:
| Q |
208 |
gtgtatgagctgatcgaggagaaccctactatgatagaagtcacgatgtttcgtgtggttgactattgcgattaacaactcatgtacatctagcctcccc |
307 |
Q |
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||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6901850 |
gtgtatgagctgatcgaggagaaccctcctgtgctagaagtcacgatgtttcgtgtggttgactattgcgattaacaactcatgcacatctagcctcccc |
6901949 |
T |
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| Q |
308 |
actataaataatgagtc |
324 |
Q |
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||||||||||||||||| |
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| T |
6901950 |
actataaataatgagtc |
6901966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 29837989 - 29837922
Alignment:
| Q |
28 |
tatctgaagccaaatgctcctataaagctcctaaattctcatagagaggagtggaaagtttttggcat |
95 |
Q |
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||||| ||||||||| |||||||||||||| |||||||||| ||||| ||||| |||| |||||||| |
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| T |
29837989 |
tatctaaagccaaatattcctataaagctccaaaattctcatggagagcagtgggaagtgtttggcat |
29837922 |
T |
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