View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4394_low_5 (Length: 250)

Name: NF4394_low_5
Description: NF4394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4394_low_5
NF4394_low_5
[»] chr3 (19 HSPs)
chr3 (47-238)||(28000410-28000601)
chr3 (50-238)||(28179413-28179601)
chr3 (47-238)||(28470736-28470927)
chr3 (58-238)||(28482978-28483159)
chr3 (58-238)||(28511792-28511973)
chr3 (62-180)||(17747149-17747267)
chr3 (62-180)||(19048469-19048587)
chr3 (114-180)||(27462659-27462725)
chr3 (102-180)||(11410410-11410487)
chr3 (91-176)||(28081333-28081418)
chr3 (111-180)||(27911443-27911512)
chr3 (84-173)||(26627075-26627160)
chr3 (1-40)||(28052307-28052346)
chr3 (1-40)||(28147091-28147130)
chr3 (1-40)||(28182880-28182919)
chr3 (47-100)||(28049605-28049658)
chr3 (47-100)||(28158109-28158162)
chr3 (1-40)||(28521284-28521323)
chr3 (47-100)||(28145403-28145456)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 28000601 - 28000410
Alignment:
Q  47 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatct 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  28000601 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatggagataaagatggataccttgatgattgtatcgtccacagatct 28000502  T
Q  147 tgttactgaatgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||  ||| |||||||||||||||||||||||||||||||    
T  28000501 tgttactgaatgatgagttatgaaatcaccaataaactgcgggcatttttcaacttcaagtatttccaattgtggaaatgttgtgtgatatt 28000410  T

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Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 28179601 - 28179413
Alignment:
Q  50 atatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgt 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||||    
T  28179601 atatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatgaataccttgatgattgtaccgtccaccgatcttgt 28179502  T
Q  150 tactgaatgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 238  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||  ||||||||||||||||||| ||||||||||    
T  28179501 tattgaatgatgagttatgaaatcaccaataaactgcgggcattcttcaactacaagtctttccaattgtggaaatgtcgtgtgatatt 28179413  T

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Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 28470736 - 28470927
Alignment:
Q  47 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatct 146  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| ||||    
T  28470736 aatatatgtttacttaaaatcatcaagtttagatttacaaacaacaaagatatatagaaataaggatgaataccttgatgattgtatcgtccacagatct 28470835  T
Q  147 tgttactgaatgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 238  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||  ||| ||||||||||||||||||||||||||    
T  28470836 tgttactgaatgatgagttaagaaatcaccaataaattgcgggcattcttcaactacaagttttttcaattgtggaaatgttgtgtgatatt 28470927  T

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Target: chr3; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 238
Target Start/End: Original strand, 28482978 - 28483159
Alignment:
Q  58 acttaaaatcatcaagtttagattttcaaa-caacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaa 156  Q
    ||||||||| ||||||||||||||| |||| ||||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  28482978 acttaaaattatcaagtttagatttacaaaacaacaaatatatatagaaataaggatgaataccttgatgattgtatcgtccacagatcttgttactgaa 28483077  T
Q  157 tgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 238  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||| |||  ||| ||||||||||||||||||||||||||    
T  28483078 tgatgagttaagaaatcaccaataaattgcgggcattcttcaactacaagttttttcaattgtggaaatgttgtgtgatatt 28483159  T

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Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 58 - 238
Target Start/End: Original strand, 28511792 - 28511973
Alignment:
Q  58 acttaaaatcatcaagtttagattttcaaa-caacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaa 156  Q
    ||||||||| ||||||||||||||| |||| ||||||| ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  28511792 acttaaaattatcaagtttagatttacaaaacaacaaatatatatagaaataaggatgaataccttgatgattgtatcgtccacagatcttgttactgaa 28511891  T
Q  157 tgatgagttatgaaatcaccaataaactgcgggcattctttaactataagcatttccaattgtggaaatgttgtgtgatatt 238  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||| |||  ||| ||||||||||||||||||||||||||    
T  28511892 tgatgagttaagaaatcaccaataaattgcgggcattcttcaactacaagttttttcaattgtggaaatgttgtgtgatatt 28511973  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 17747149 - 17747267
Alignment:
Q  62 aaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatg 161  Q
    ||||| ||||||||||||    ||||||||||||||||||||| |||| ||||||||||||||||||||||| || || | ||||||||| |||||||||    
T  17747149 aaaattatcaagtttagaaacacaaacaacaaagatatatagaaataaggatggataccttgatgattgtattgttcagagatcttgttaatgaatgatg 17747248  T
Q  162 agttatgaaatcaccaata 180  Q
    ||||||| |||||||||||    
T  17747249 agttatgcaatcaccaata 17747267  T

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Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 19048469 - 19048587
Alignment:
Q  62 aaaatcatcaagtttagattttcaaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatg 161  Q
    ||||| ||||||||||||    ||||||||||||||||||||| |||| ||||||||||||||||||||||| || || | ||||||||| |||||||||    
T  19048469 aaaattatcaagtttagaaacacaaacaacaaagatatatagaaataaggatggataccttgatgattgtattgttcagagatcttgttaatgaatgatg 19048568  T
Q  162 agttatgaaatcaccaata 180  Q
    ||||||| |||||||||||    
T  19048569 agttatgcaatcaccaata 19048587  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 27462659 - 27462725
Alignment:
Q  114 ggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatcaccaata 180  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  27462659 ggataccttgatgattgtattgtcgacaaatcttgttactgaatgatgagttatgaaatcactaata 27462725  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 11410487 - 11410410
Alignment:
Q  102 agagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatcaccaata 180  Q
    ||||||||||||| ||||||||||| |||||  ||| ||| ||||||| |||||||||||||| |||||||||||||||    
T  11410487 agagataaagatg-ataccttgatggttgtacggtcgacagatcttgtaactgaatgatgagtcatgaaatcaccaata 11410410  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 28081418 - 28081333
Alignment:
Q  91 caaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatcacc 176  Q
    ||||||||||||||  ||  |||| |||||| ||||||| |||| |||||| ||||  ||||||||||||||||||||||||||||    
T  28081418 caaagatatatagaattagggatgaatacctcgatgattctatcatccacagatctaattactgaatgatgagttatgaaatcacc 28081333  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 27911512 - 27911443
Alignment:
Q  111 gatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatcaccaata 180  Q
    ||||||||||||| |||||| | ||||||||||||||||| | ||||||||  || ||||||||||||||    
T  27911512 gatggataccttggtgattggaccgtccacaaatcttgttgcagaatgatgcattgtgaaatcaccaata 27911443  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 26627160 - 26627075
Alignment:
Q  84 caaacaacaaagatatatagagataaagatggataccttgatgattgtatcgtccacaaatcttgttactgaatgatgagttatgaaatc 173  Q
    ||||||||||||||||||   || ||||| ||||||||| ||||||||| |||||| | ||||||||  ||||||| |||||||||||||    
T  26627160 caaacaacaaagatatat---ga-aaagagggatacctttatgattgtaccgtccatagatcttgttgttgaatgacgagttatgaaatc 26627075  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28052346 - 28052307
Alignment:
Q  1 tttaattttcaacactccaacccttttgtttttcaatctg 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  28052346 tttaattttcgacactccaacccttttgtttttcaatctg 28052307  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28147130 - 28147091
Alignment:
Q  1 tttaattttcaacactccaacccttttgtttttcaatctg 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  28147130 tttaattttcaacactccaacctttttgtttttcaatctg 28147091  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28182919 - 28182880
Alignment:
Q  1 tttaattttcaacactccaacccttttgtttttcaatctg 40  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  28182919 tttaattttcaacaccccaacccttttgtttttcaatctg 28182880  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 28049658 - 28049605
Alignment:
Q  47 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatata 100  Q
    |||||||  ||||||||||||||||||||||||||  |||| ||||||||||||    
T  28049658 aatatataatgacttaaaatcatcaagtttagattcacaaataacaaagatata 28049605  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 28158162 - 28158109
Alignment:
Q  47 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatata 100  Q
    |||||||| ||||||||||||||||||||||||||  | || ||||||||||||    
T  28158162 aatatatgctgacttaaaatcatcaagtttagattcacgaataacaaagatata 28158109  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28521284 - 28521323
Alignment:
Q  1 tttaattttcaacactccaacccttttgtttttcaatctg 40  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  28521284 tttacttttcaacactccaacacttttgtttttcaatctg 28521323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 28145456 - 28145403
Alignment:
Q  47 aatatatgttgacttaaaatcatcaagtttagattttcaaacaacaaagatata 100  Q
    |||||||| ||||||||||| || |||||||||||  |||| ||||||||||||    
T  28145456 aatatatgatgacttaaaattatgaagtttagattcacaaataacaaagatata 28145403  T

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