View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4395-Insertion-1 (Length: 1106)

Name: NF4395-Insertion-1
Description: NF4395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4395-Insertion-1
NF4395-Insertion-1
[»] chr2 (20 HSPs)
chr2 (8-1065)||(40058519-40059587)
chr2 (138-743)||(40084605-40085198)
chr2 (301-735)||(40076832-40077280)
chr2 (778-944)||(40085207-40085362)
chr2 (76-124)||(15861133-15861181)
chr2 (78-124)||(39606952-39606998)
chr2 (865-901)||(1830152-1830188)
chr2 (865-901)||(42419906-42419942)
chr2 (865-899)||(7103394-7103428)
chr2 (863-901)||(21616579-21616617)
chr2 (865-899)||(23974414-23974448)
chr2 (865-899)||(33197182-33197216)
chr2 (202-255)||(40076726-40076780)
chr2 (865-898)||(10619141-10619174)
chr2 (935-999)||(11344360-11344425)
chr2 (21-50)||(25215519-25215548)
chr2 (865-894)||(37419588-37419617)
chr2 (864-901)||(43985322-43985359)
chr2 (73-118)||(45281492-45281537)
chr2 (73-118)||(45287953-45287998)
[»] chr3 (15 HSPs)
chr3 (556-694)||(53322412-53322548)
chr3 (863-901)||(26911704-26911742)
chr3 (865-901)||(25447166-25447202)
chr3 (866-901)||(33405114-33405149)
chr3 (865-900)||(26990146-26990181)
chr3 (589-664)||(44352747-44352822)
chr3 (865-899)||(31615481-31615515)
chr3 (65-119)||(43493866-43493920)
chr3 (790-840)||(53322651-53322700)
chr3 (68-121)||(19227169-19227222)
chr3 (865-894)||(32582857-32582886)
chr3 (932-996)||(35708251-35708316)
chr3 (864-901)||(41848636-41848673)
chr3 (932-1000)||(49586989-49587057)
chr3 (21-50)||(51883985-51884014)
[»] chr4 (21 HSPs)
chr4 (591-694)||(22016195-22016298)
chr4 (435-521)||(22016597-22016683)
chr4 (563-682)||(20005703-20005812)
chr4 (865-901)||(22662172-22662208)
chr4 (865-901)||(22666651-22666687)
chr4 (865-901)||(25571372-25571408)
chr4 (865-901)||(27043751-27043787)
chr4 (865-901)||(41336873-41336909)
chr4 (865-897)||(52315118-52315150)
chr4 (865-896)||(52428782-52428813)
chr4 (932-977)||(44119235-44119281)
chr4 (21-51)||(44310016-44310046)
chr4 (66-124)||(46462391-46462449)
chr4 (932-977)||(54325110-54325156)
chr4 (865-894)||(3891711-3891740)
chr4 (21-50)||(5597534-5597563)
chr4 (868-901)||(9720578-9720611)
chr4 (23-52)||(10998962-10998991)
chr4 (864-901)||(19305039-19305076)
chr4 (864-901)||(37636106-37636143)
chr4 (21-50)||(51268753-51268782)
[»] chr8 (9 HSPs)
chr8 (577-677)||(5450715-5450814)
chr8 (66-124)||(39910475-39910533)
chr8 (865-901)||(38602440-38602476)
chr8 (865-903)||(2606160-2606198)
chr8 (865-903)||(6496812-6496850)
chr8 (868-901)||(6950435-6950468)
chr8 (865-894)||(10727464-10727493)
chr8 (21-50)||(28962108-28962137)
chr8 (66-111)||(43295959-43296004)
[»] chr7 (13 HSPs)
chr7 (790-840)||(35052814-35052864)
chr7 (587-648)||(35052914-35052975)
chr7 (65-142)||(27115305-27115382)
chr7 (554-627)||(35052966-35053039)
chr7 (865-901)||(30812251-30812287)
chr7 (865-901)||(44822071-44822107)
chr7 (864-893)||(7612551-7612580)
chr7 (864-901)||(9210934-9210971)
chr7 (65-110)||(24163343-24163388)
chr7 (21-50)||(27128860-27128889)
chr7 (64-121)||(31741949-31742006)
chr7 (865-902)||(39551469-39551506)
chr7 (865-902)||(44917447-44917484)
[»] chr1 (14 HSPs)
chr1 (949-1000)||(23370389-23370440)
chr1 (66-124)||(34500162-34500220)
chr1 (864-902)||(17009502-17009540)
chr1 (563-682)||(14124553-14124662)
chr1 (864-901)||(30257797-30257834)
chr1 (865-901)||(6292605-6292641)
chr1 (866-901)||(2522709-2522744)
chr1 (67-122)||(37096170-37096225)
chr1 (65-115)||(47507584-47507634)
chr1 (865-894)||(172494-172523)
chr1 (947-1000)||(4202218-4202271)
chr1 (865-894)||(29045854-29045883)
chr1 (864-901)||(29793618-29793655)
chr1 (865-894)||(30014000-30014029)
[»] chr5 (19 HSPs)
chr5 (563-618)||(12735846-12735901)
chr5 (563-618)||(12798673-12798728)
chr5 (66-121)||(39933348-39933403)
chr5 (865-901)||(9107203-9107239)
chr5 (64-124)||(22626810-22626870)
chr5 (865-901)||(32010058-32010094)
chr5 (865-901)||(32197846-32197882)
chr5 (65-104)||(27094316-27094355)
chr5 (869-900)||(40111382-40111413)
chr5 (790-840)||(12735614-12735664)
chr5 (790-840)||(12798441-12798491)
chr5 (865-903)||(17369314-17369352)
chr5 (75-124)||(8955351-8955400)
chr5 (864-901)||(14706204-14706241)
chr5 (21-50)||(19206393-19206422)
chr5 (65-142)||(21488280-21488357)
chr5 (21-50)||(34631984-34632013)
chr5 (947-1000)||(35135751-35135804)
chr5 (865-894)||(40335794-40335823)
[»] chr6 (3 HSPs)
chr6 (865-901)||(4308890-4308926)
chr6 (865-901)||(30536886-30536922)
chr6 (870-901)||(7351597-7351628)
[»] scaffold0014 (2 HSPs)
scaffold0014 (65-115)||(133207-133257)
scaffold0014 (21-50)||(20133-20162)
[»] scaffold0590 (1 HSPs)
scaffold0590 (947-1000)||(1163-1216)
[»] scaffold0275 (1 HSPs)
scaffold0275 (947-1000)||(2759-2812)
[»] scaffold0018 (1 HSPs)
scaffold0018 (64-121)||(153979-154036)


Alignment Details
Target: chr2 (Bit Score: 811; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 8 - 1065
Target Start/End: Original strand, 40058519 - 40059587
Alignment:
Q  8 aggagaatatgctcctggcaaaatgcaacatttcttgtagtgattatttgctaagctatatagaccatatacattatttattcattgaatttaaaaagtg 107  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058519 aggagaatatgctcctgacaaaatgcaacattttttgtagtgattatttgctaagctatatagaccatatacattatttattcattgaatttaaaaagtg 40058618  T
Q  108 aaaaattgtttataatttggacctgacggagtattaccttgttcctcctcgtagaatgtacattatatatagctagttagctacacatgttatattaccc 207  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40058619 aaaaattgtttataatttggacttgacggagtattaccttgtttctcctcatagaatgtacattatatatagctagttagctacacatgttatattactc 40058718  T
Q  208 ttgttcttcttctaagcatcatcacttacatttcacatccacgtgaccnnnnnnn-----cacatg--taacaaataaaccaaaccaaaccaaagtccaa 300  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||            ||||||  |||||||||||||||||||||    | || |     
T  40058719 ttgttcttcttcaaagcatcatcacttacatttcacacccacgtgaccaaaaaatacaaacacatgcgtaacaaataaaccaaaccaaagttcattc-at 40058817  T
Q  301 tctttccttccctagtgagtttctttttctctttttggatcattcattcttctagaataattaccatgagagccactgaaattgtgttggttctgctttg 400  Q
    || ||| ||||||||||||||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||||  |||||||||||||||||| |||||    
T  40058818 tccttctttccctagtgagtttctttctctatttttggttcattcattcttccaaaataattaccatgagagcctttgaaattgtgttggttctactttg 40058917  T
Q  401 gttcttaccaacaatgttttgcaccaatgtggattatgatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactac 500  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058918 gttcctaccaaaaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactac 40059017  T
Q  501 cctcgtagtactccccaggttttattttatgtctctctttgattctgtttgtgtgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggc 600  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059018 cctcgtagtactccacaggttttattttatgtctctctttgattctgtttgtgtgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggc 40059117  T
Q  601 cagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggttctctttgc 700  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40059118 cagaccttattcagaaatctaaagatggaggacttgatgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggttctctttgc 40059217  T
Q  701 ttcatttcttctctcacattcttaccattttcttttagcattgtattgaatttgttcatgtgtgaaggaaaagtttgcattgcttgcaggaaaagaaaac 800  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40059218 ttcatttcttctctcacattcttaccattttctttgagcattgtattgaatttgttcatgtgtgaaggaaaagtttgcattgcttgcagaaaaagaaaac 40059317  T
Q  801 aagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacattttttgactcatttggattgacttatttgagtttatctactgacata 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  40059318 aagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacatttttagactcgtttggattgacttatttgagtttatctactgacata 40059417  T
Q  901 atctctccaagata-ttaatgaaacataataattatatgaaaac-atatgactttgttttatcttttgt-aatagaaatatcatatacgtaagaacttat 997  Q
    ||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40059418 atctctccaagatagataatgaaa-ataataattatatgaaaacaatatgactttgttttatcttttgtaaatagaaatatcatatacgtaagaacttat 40059516  T
Q  998 atgctgtaagtgcttaataaagtagtttatcc-aacatggtg-tgatctactgtaa-gtaagaaagactat 1065  Q
    ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||||    
T  40059517 atgttgtaagtgcttaataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactat 40059587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 138 - 743
Target Start/End: Original strand, 40084605 - 40085198
Alignment:
Q  138 gtattaccttgttcctcctcgtagaatgtacattatatatagctagttagctacacatgttatattacccttgttcttcttctaagcatcatcacttaca 237  Q
    ||||||||||||| |||||| ||||||||||||||||||||            ||| ||||||||||| | |||||||||||||||||||||||||||||    
T  40084605 gtattaccttgtttctcctcatagaatgtacattatatata------------cacgtgttatattactcatgttcttcttctaagcatcatcacttaca 40084692  T
Q  238 tttcacatccacgtgaccnnnnnnncacatgtaacaaataaaccaaaccaaaccaaagtccaatctttccttccctagtgagtttctttttctctttttg 337  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084693 tttcacatccacgtgaccaaaaaaacacatgtaacaaataaaccaaaccaaaccaaagtccaatctttccttccctagtgagtttctttttctctttttg 40084792  T
Q  338 gatcattcattcttctagaataattaccatgagagccactgaaattgtgttggttctgctttggttcttaccaacaatgttttgcaccaatgtggattat 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084793 gatcattcattcttctagaataattaccatgagagccactgaaattgtgttggttctgctttggttcttaccaacaatgttttgcaccaatgtggattat 40084892  T
Q  438 gatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccccaggttttattttatgtctctc 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40084893 gatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccacaggttttattttatgtctctc 40084992  T
Q  538 tttgattctgtttgtgtgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttga 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40084993 tttgattctgtttgtgtgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttga 40085092  T
Q  638 tgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggttctctttgcttcatttcttctctcacattcttaccattttctttta 737  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  40085093 tgttattgaaacctatgttttctggaacttacatgaacctgttaaaggccaggttctctttgcttcatttcttctcttacattcttaccattttctttga 40085192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 301 - 735
Target Start/End: Original strand, 40076832 - 40077280
Alignment:
Q  301 tctttccttccctagtgagtttctttttctctttttggatcattcattcttctagaataattaccatgagagccactgaaattgtgttggttctgctttg 400  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||  |||||||||||||||||| |||||    
T  40076832 tctttccttcactagtgagtttctttttctctctttggttcattcattcttccaaaataattaccatgagagcctttgaaattgtgttggttctactttg 40076931  T
Q  401 gttcttaccaacaatgttttgcaccaatgtggattatgatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactac 500  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40076932 gttcctaccaaaaatgttttgcaccaatgtggattatgaccatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactac 40077031  T
Q  501 cctcgtagtactccccaggttttattttatgtctctctttgattctgtttgtgtg--------------ttgaatttaaacagtgctgaatttgttgttg 586  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| |              |||| ||||||||||||||||||||||||||    
T  40077032 cctcgtagtactccacaggttttattttatgtctctctttgattctgtttgtgagtttttgcattgtatttgattttaaacagtgctgaatttgttgttg 40077131  T
Q  587 tttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggc 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40077132 tttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggc 40077231  T
Q  687 caggttctctttgcttcatttcttctctcacattcttaccattttcttt 735  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||    
T  40077232 caggttctctttgcttcatttcttctctcacatttttaccactttcttt 40077280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 778 - 944
Target Start/End: Original strand, 40085207 - 40085362
Alignment:
Q  778 cattgcttgcaggaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacattttttgactcatttggattgactt 877  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||              |||||||||||||    
T  40085207 cattgcttgcaggaaaagaaaacaagtgtctatgttaagctgaattgctaattgttgaaagcatgactgaaca------------agtttggattgactt 40085294  T
Q  878 atttgagtttatctactgacataatctctccaagata-ttaatgaaacataataattatatgaaaaca 944  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||| ||| ||||||||||||    
T  40085295 atttgagtttatctactgacataatctctccaagatagataatgaaacatattaactatatgaaaaca 40085362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 15861181 - 15861133
Alignment:
Q  76 atacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 124  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||||||    
T  15861181 atacatcatttatttaatgaatttaaaaagtgaaaaattgtttataatt 15861133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 39606952 - 39606998
Alignment:
Q  78 acattatttattcattgaatttaaaaagtgaaaaattgtttataatt 124  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||    
T  39606952 acattatttattcaataaatttaaaaagtaaaaaattgtttataatt 39606998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 1830188 - 1830152
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1830188 tttggattgacttatttgagtttatttactgacataa 1830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 42419942 - 42419906
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||||||||| |||||||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataa 42419906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 899
Target Start/End: Original strand, 7103394 - 7103428
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacat 899  Q
    |||||||||||||||||||||||||||| ||||||    
T  7103394 tttggattgacttatttgagtttatctattgacat 7103428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 863 - 901
Target Start/End: Original strand, 21616579 - 21616617
Alignment:
Q  863 catttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  21616579 catttggattgacttatttcagtttatccactgacataa 21616617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 899
Target Start/End: Original strand, 23974414 - 23974448
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacat 899  Q
    |||||||||||||||||| ||||||||||||||||    
T  23974414 tttggattgacttatttgggtttatctactgacat 23974448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 899
Target Start/End: Original strand, 33197182 - 33197216
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacat 899  Q
    |||||||||||||||||||||||||| ||||||||    
T  33197182 tttggattgacttatttgagtttatcaactgacat 33197216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 40076726 - 40076780
Alignment:
Q  202 ttacccttgttcttctt-ctaagcatcatcacttacatttcacatccacgtgacc 255  Q
    |||| |||||||||||| | || ||||||||||||||||||||| ||||||||||    
T  40076726 ttactcttgttcttcttacaaaccatcatcacttacatttcacacccacgtgacc 40076780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 898
Target Start/End: Original strand, 10619141 - 10619174
Alignment:
Q  865 tttggattgacttatttgagtttatctactgaca 898  Q
    |||||||||||| |||||||||||||||||||||    
T  10619141 tttggattgactcatttgagtttatctactgaca 10619174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 935 - 999
Target Start/End: Original strand, 11344360 - 11344425
Alignment:
Q  935 tatgaaaaca-tatgactttgttttatcttttgtaatagaaatatcatatacgtaagaacttatat 999  Q
    |||||||||| | ||||||| ||||||||||||| ||||||||||| ||| | |||| ||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcacttatat 11344425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 25215548 - 25215519
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  25215548 cctggcaaaatgcaacatttcttgtagtga 25215519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 894
Target Start/End: Original strand, 37419588 - 37419617
Alignment:
Q  865 tttggattgacttatttgagtttatctact 894  Q
    ||||||||||||||||||||||||||||||    
T  37419588 tttggattgacttatttgagtttatctact 37419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 901
Target Start/End: Complemental strand, 43985359 - 43985322
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  43985359 atttggatcgacttatttaagtttatctactgacataa 43985322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 45281537 - 45281492
Alignment:
Q  73 catatacattatttattcattgaatttaaaaagtgaaaaattgttt 118  Q
    |||||| |||||||||||| | |||||||||| |||||||||||||    
T  45281537 catatatattatttattcaataaatttaaaaaatgaaaaattgttt 45281492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 45287998 - 45287953
Alignment:
Q  73 catatacattatttattcattgaatttaaaaagtgaaaaattgttt 118  Q
    |||||| |||||||||||| | |||||||||| |||||||||||||    
T  45287998 catatatattatttattcaataaatttaaaaaatgaaaaattgttt 45287953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 5e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 556 - 694
Target Start/End: Original strand, 53322412 - 53322548
Alignment:
Q  556 ttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgt 655  Q
    |||| ||||||| ||| |||||||||||||| ||||||||||||||| |||| ||||| |||| || |||||||||| || |||||||  ||| |||||     
T  53322412 ttgattttaaacggtgttgaatttgttgttggttatagatgtggccaaacctcattcaaaaatatatagatggaggattttatgtcatccaaa-ctatg- 53322509  T
Q  656 tttctggaacttacatgaacctgttaaaggccaggttct 694  Q
    |||||||||||||||| |||| ||||||||  |||||||    
T  53322510 tttctggaacttacataaaccagttaaaggttaggttct 53322548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 863 - 901
Target Start/End: Complemental strand, 26911742 - 26911704
Alignment:
Q  863 catttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26911742 catttggattgacttatttgagtttatctactgacataa 26911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 865 - 901
Target Start/End: Original strand, 25447166 - 25447202
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||||||||||||    
T  25447166 tttggattgacttatttgagtttatctactgacataa 25447202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 866 - 901
Target Start/End: Original strand, 33405114 - 33405149
Alignment:
Q  866 ttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||||||||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataa 33405149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 865 - 900
Target Start/End: Original strand, 26990146 - 26990181
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacata 900  Q
    |||||||||||||||||||| |||||||||||||||    
T  26990146 tttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 589 - 664
Target Start/End: Complemental strand, 44352822 - 44352747
Alignment:
Q  589 tatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaa 664  Q
    ||||||||||||| |  |||||||| | | | ||||| || ||| | |||||||||||||||||||||||||||||    
T  44352822 tatagatgtggcctgctcttattcaaacagcaaaagaaggtggaatagatgtcattgaaacctatgttttctggaa 44352747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 899
Target Start/End: Original strand, 31615481 - 31615515
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacat 899  Q
    ||||||||||||||||||||||||||||| |||||    
T  31615481 tttggattgacttatttgagtttatctacggacat 31615515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 43493866 - 43493920
Alignment:
Q  65 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgttta 119  Q
    |||| |||||||||||| |||||||   ||||||||||||||||||| |||||||    
T  43493866 atatggaccatatacatcatttattagatgaatttaaaaagtgaaaagttgttta 43493920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 790 - 840
Target Start/End: Original strand, 53322651 - 53322700
Alignment:
Q  790 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 840  Q
    ||||||||||||||||| ||| |||| | ||||||||||||||||||||||    
T  53322651 gaaaagaaaacaagtgtgtat-ttaatctgaattgctaattgttgaaagca 53322700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 19227222 - 19227169
Alignment:
Q  68 tagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 121  Q
    |||||||||||||| ||||||| | ||||| ||||||||||||| ||| |||||    
T  19227222 tagaccatatacatcatttattaagtgaatctaaaaagtgaaaagttgcttata 19227169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 894
Target Start/End: Complemental strand, 32582886 - 32582857
Alignment:
Q  865 tttggattgacttatttgagtttatctact 894  Q
    ||||||||||||||||||||||||||||||    
T  32582886 tttggattgacttatttgagtttatctact 32582857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 996
Target Start/End: Complemental strand, 35708316 - 35708251
Alignment:
Q  932 ttatatgaaaaca-tatgactttgttttatcttttgtaatagaaatatcatatacgtaagaactta 996  Q
    ||||||||||||| ||||||||||||| |||||| || ||||||||| ||||| | |||| |||||    
T  35708316 ttatatgaaaacagtatgactttgtttcatctttagttatagaaatagcatatgcataagcactta 35708251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 901
Target Start/End: Original strand, 41848636 - 41848673
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataa 901  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  41848636 atttagattgacttatttgagtttatctactaacataa 41848673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 1000
Target Start/End: Original strand, 49586989 - 49587057
Alignment:
Q  932 ttatatgaaaaca-tatgactttgttttatcttttgtaatagaaatatcatatacgtaagaacttatatg 1000  Q
    ||||||||||||| | ||||||| ||||||||||||| ||||||||| | |||| ||||| |||||||||    
T  49586989 ttatatgaaaacagtttgactttattttatcttttgttatagaaatagcttata-gtaagcacttatatg 49587057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 51884014 - 51883985
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  51884014 cctggcaaaatgcaacatttcttgtagtga 51883985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 7e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 591 - 694
Target Start/End: Complemental strand, 22016298 - 22016195
Alignment:
Q  591 tagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacctgttaaaggccagg 690  Q
    ||||||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||||||| | || || || |||  ||||||||    
T  22016298 tagatgtggcctgaccttattcagaaatcaaaagatgggggaattgatgtgattgagacttatgttttctggaacctgcacgagccggttcgaggccagg 22016199  T
Q  691 ttct 694  Q
    ||||    
T  22016198 ttct 22016195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 435 - 521
Target Start/End: Complemental strand, 22016683 - 22016597
Alignment:
Q  435 tatgatcatagagcattggtcattgatggtaaacgtagagtcttgatttctggttctattcactaccctcgtagtactccccaggtt 521  Q
    ||||||||||||||||||||||||||||||||||| || ||  | || |||||||| ||||| || |||||||| ||||| ||||||    
T  22016683 tatgatcatagagcattggtcattgatggtaaacgcagggttcttatgtctggttccattcattatcctcgtagcactcctcaggtt 22016597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 563 - 682
Target Start/End: Original strand, 20005703 - 20005812
Alignment:
Q  563 taaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctgg 662  Q
    ||||| ||| |||||||||||||| || |||||||||||| |||||||||| ||||       |||||||||| ||||||| |||| ||||| ||||| |    
T  20005703 taaacggtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaat-------tggaggactttatgtcatcgaaa-ctatg-tttct-g 20005792  T
Q  663 aacttacatgaacctgttaa 682  Q
    |||||||||||||| |||||    
T  20005793 aacttacatgaaccagttaa 20005812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Original strand, 22662172 - 22662208
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22662172 tttggattgacttatttgagtttatctactaacataa 22662208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Original strand, 22666651 - 22666687
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||||| ||||||    
T  22666651 tttggattgacttatttgagtttatctactaacataa 22666687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 25571408 - 25571372
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||| |||||||||||||||||||||||||||    
T  25571408 tttggattggcttatttgagtttatctactgacataa 25571372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Original strand, 27043751 - 27043787
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27043751 tttggattgacttatttgagcttatctactgacataa 27043787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 41336909 - 41336873
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||||| ||||||    
T  41336909 tttggattgacttatttgagtttatctactcacataa 41336873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 897
Target Start/End: Original strand, 52315118 - 52315150
Alignment:
Q  865 tttggattgacttatttgagtttatctactgac 897  Q
    |||||||||||||||||||||||||||||||||    
T  52315118 tttggattgacttatttgagtttatctactgac 52315150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 865 - 896
Target Start/End: Complemental strand, 52428813 - 52428782
Alignment:
Q  865 tttggattgacttatttgagtttatctactga 896  Q
    ||||||||||||||||||||||||||||||||    
T  52428813 tttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 932 - 977
Target Start/End: Original strand, 44119235 - 44119281
Alignment:
Q  932 ttatatgaaaacatat-gactttgttttatcttttgtaatagaaata 977  Q
    |||||||||||||||| |||||||||||||||||||  |||||||||    
T  44119235 ttatatgaaaacatattgactttgttttatcttttgctatagaaata 44119281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 44310046 - 44310016
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtgat 51  Q
    |||||||||||||||||||||||||||||||    
T  44310046 cctggcaaaatgcaacatttcttgtagtgat 44310016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 46462449 - 46462391
Alignment:
Q  66 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 124  Q
    |||| ||||||||||| ||||||| | ||||| ||||||||||||| ||| ||||||||    
T  46462449 tataaaccatatacatcatttatttaatgaatctaaaaagtgaaaagttgcttataatt 46462391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 932 - 977
Target Start/End: Original strand, 54325110 - 54325156
Alignment:
Q  932 ttatatgaaaaca-tatgactttgttttatcttttgtaatagaaata 977  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||||    
T  54325110 ttatatgaaaacagtttgactttattttatcttttgtaatagaaata 54325156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 894
Target Start/End: Complemental strand, 3891740 - 3891711
Alignment:
Q  865 tttggattgacttatttgagtttatctact 894  Q
    ||||||||||||||||||||||||||||||    
T  3891740 tttggattgacttatttgagtttatctact 3891711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 5597563 - 5597534
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  5597563 cctggcaaaatgcaacatttcttgtagtga 5597534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 868 - 901
Target Start/End: Original strand, 9720578 - 9720611
Alignment:
Q  868 ggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||||||||| ||||||    
T  9720578 ggattgacttatttgagtttatctactaacataa 9720611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 10998962 - 10998991
Alignment:
Q  23 tggcaaaatgcaacatttcttgtagtgatt 52  Q
    ||||||||||||||||||||||||||||||    
T  10998962 tggcaaaatgcaacatttcttgtagtgatt 10998991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 901
Target Start/End: Complemental strand, 19305076 - 19305039
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  19305076 atttggattgacttatttgagattatctattgacataa 19305039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 901
Target Start/End: Original strand, 37636106 - 37636143
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  37636106 atttggattgatttatttgagtttatctactaacataa 37636143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 51268782 - 51268753
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  51268782 cctggcaaaatgcaacatttcttgtagtga 51268753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 577 - 677
Target Start/End: Original strand, 5450715 - 5450814
Alignment:
Q  577 tttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctggaacttacatgaacc 676  Q
    ||||||||||||| |||||||||||||| ||||| |||||  ||||||| |||||| | ||||| ||| |||||||||||||||||||   |||||||||    
T  5450715 tttgttgttgttt-tagatgtggccagatcttatccagaaggctaaagaaggaggattggatgtgattcaaacctatgttttctggaatggacatgaacc 5450813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 39910533 - 39910475
Alignment:
Q  66 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 124  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  39910533 tatagaccacatacattatttattcaatgaatctaaaaagtgaaaaattgcttataatt 39910475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 38602476 - 38602440
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||| ||||||||||||||||    
T  38602476 tttggattgacttatttgagcttatctactgacataa 38602440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 903
Target Start/End: Complemental strand, 2606198 - 2606160
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataatc 903  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  2606198 tttggattgacttattcgagcttatctactgacataatc 2606160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 903
Target Start/End: Original strand, 6496812 - 6496850
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataatc 903  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  6496812 tttggattgacttgtttgagtttatctactaacataatc 6496850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 868 - 901
Target Start/End: Complemental strand, 6950468 - 6950435
Alignment:
Q  868 ggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||| |||||    
T  6950468 ggattgacttatttgagtttatctactggcataa 6950435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 894
Target Start/End: Complemental strand, 10727493 - 10727464
Alignment:
Q  865 tttggattgacttatttgagtttatctact 894  Q
    ||||||||||||||||||||||||||||||    
T  10727493 tttggattgacttatttgagtttatctact 10727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 28962108 - 28962137
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  28962108 cctggcaaaatgcaacatttcttgtagtga 28962137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 43295959 - 43296004
Alignment:
Q  66 tatagaccatatacattatttattcattgaatttaaaaagtgaaaa 111  Q
    ||||||||| |||||| ||||||| | |||||||||||||||||||    
T  43295959 tatagaccacatacatcatttattgaatgaatttaaaaagtgaaaa 43296004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 790 - 840
Target Start/End: Complemental strand, 35052864 - 35052814
Alignment:
Q  790 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 840  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  35052864 gaaaagaaaacaagtgtgtatgttaagctgaattgctaattgttgaaagca 35052814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 587 - 648
Target Start/End: Complemental strand, 35052975 - 35052914
Alignment:
Q  587 tttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaa 648  Q
    |||||||||||||||| |||||||||| |||| || ||||||||||||| ||||||| ||||    
T  35052975 tttatagatgtggccaaaccttattcaaaaatttatagatggaggactttatgtcatcgaaa 35052914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 27115305 - 27115382
Alignment:
Q  65 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatttggacctgacggagtatt 142  Q
    |||||||||| |||||| ||||||||| ||||| ||||||||||||  ||| ||||||||  |||| || ||||||||    
T  27115305 atatagaccacatacataatttattcaatgaatctaaaaagtgaaaggttgcttataattgagaccggagggagtatt 27115382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 554 - 627
Target Start/End: Complemental strand, 35053039 - 35052966
Alignment:
Q  554 tgttgaatttaaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatg 627  Q
    |||||| ||||||  ||| ||||||||| |||| ||||||||||||||| |||||||||| |||| || |||||    
T  35053039 tgttgattttaaaaggtgttgaatttgtcgttggttatagatgtggccaaaccttattcaaaaatttatagatg 35052966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 30812287 - 30812251
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30812287 tttggattgacttatttgagtttacctactgacataa 30812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 44822107 - 44822071
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||||||||| |||||||||    
T  44822107 tttggattgacttatttgagtttatctgctgacataa 44822071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 893
Target Start/End: Complemental strand, 7612580 - 7612551
Alignment:
Q  864 atttggattgacttatttgagtttatctac 893  Q
    ||||||||||||||||||||||||||||||    
T  7612580 atttggattgacttatttgagtttatctac 7612551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 901
Target Start/End: Complemental strand, 9210971 - 9210934
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  9210971 atttggattgacttatttgagcttatctactgatataa 9210934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 24163343 - 24163388
Alignment:
Q  65 atatagaccatatacattatttattcattgaatttaaaaagtgaaa 110  Q
    ||||||||||||||||| |||||| || |||||| |||||||||||    
T  24163343 atatagaccatatacatcatttatgcaatgaattaaaaaagtgaaa 24163388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 27128860 - 27128889
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  27128860 cctggcaaaatgcaacatttcttgtagtga 27128889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 31741949 - 31742006
Alignment:
Q  64 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 121  Q
    |||| |||||| |||||| |||||||   ||||||||||||||||||| |||||||||    
T  31741949 tataaagaccacatacatcatttattagatgaatttaaaaagtgaaaagttgtttata 31742006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 902
Target Start/End: Original strand, 39551469 - 39551506
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataat 902  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  39551469 tttggattgacttatttgagtttttctacttacataat 39551506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 902
Target Start/End: Original strand, 44917447 - 44917484
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataat 902  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  44917447 tttggattgacttatttgagtttatctcccgacataat 44917484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 949 - 1000
Target Start/End: Original strand, 23370389 - 23370440
Alignment:
Q  949 actttgttttatcttttgtaatagaaatatcatatacgtaagaacttatatg 1000  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  23370389 actttgttttatcttttgtaatagaaatagcttatacgtaagtacttatatg 23370440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 34500162 - 34500220
Alignment:
Q  66 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 124  Q
    ||||||||| || ||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  34500162 tatagaccacatgcattatttattcaatgaatctaaaaagtgaaaaattgcttataatt 34500220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 864 - 902
Target Start/End: Original strand, 17009502 - 17009540
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataat 902  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17009502 atttgaattgacttatttgagtttatctactgacataat 17009540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 563 - 682
Target Start/End: Complemental strand, 14124662 - 14124553
Alignment:
Q  563 taaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaatctaaagatggaggacttgatgtcattgaaacctatgttttctgg 662  Q
    ||||| ||| |||||||||||||| || |||||||||||| |||||||||| ||||       |||||||||| ||||||| |||| ||||| ||||| |    
T  14124662 taaacggtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaat-------tggaggactttatgtcatcgaaa-ctatg-tttct-g 14124573  T
Q  663 aacttacatgaacctgttaa 682  Q
    |||||||||||||| |||||    
T  14124572 aacttacatgaaccagttaa 14124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 864 - 901
Target Start/End: Complemental strand, 30257834 - 30257797
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  30257834 atttggatttacttatttgagtttatctactgacataa 30257797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 6292641 - 6292605
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6292641 tttggattgacttatttgagcttatctactgacataa 6292605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 866 - 901
Target Start/End: Complemental strand, 2522744 - 2522709
Alignment:
Q  866 ttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||||| |||||    
T  2522744 ttggattgacttatttgagtttatctactggcataa 2522709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 37096170 - 37096225
Alignment:
Q  67 atagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataa 122  Q
    ||||| || |||||| ||||||||| ||||| |||||||| |||||||||||||||    
T  37096170 atagatcacatacatcatttattcaatgaatctaaaaagtcaaaaattgtttataa 37096225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 47507634 - 47507584
Alignment:
Q  65 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattg 115  Q
    |||| |||||||||||| ||||||| | ||||| |||||||||||||||||    
T  47507634 atatggaccatatacataatttattaaatgaatctaaaaagtgaaaaattg 47507584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 894
Target Start/End: Original strand, 172494 - 172523
Alignment:
Q  865 tttggattgacttatttgagtttatctact 894  Q
    ||||||||||||||||||||||||||||||    
T  172494 tttggattgacttatttgagtttatctact 172523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 947 - 1000
Target Start/End: Original strand, 4202218 - 4202271
Alignment:
Q  947 tgactttgttttatcttttgtaatagaaatatcatatacgtaagaacttatatg 1000  Q
    |||||||| |||||||||||| ||||||||| | ||||| |||| |||||||||    
T  4202218 tgactttggtttatcttttgttatagaaataacttatacttaagcacttatatg 4202271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 894
Target Start/End: Original strand, 29045854 - 29045883
Alignment:
Q  865 tttggattgacttatttgagtttatctact 894  Q
    ||||||||||||||||||||||||||||||    
T  29045854 tttggattgacttatttgagtttatctact 29045883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 901
Target Start/End: Original strand, 29793618 - 29793655
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataa 901  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  29793618 atttgtattgacttatttgagcttatctactgacataa 29793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 894
Target Start/End: Original strand, 30014000 - 30014029
Alignment:
Q  865 tttggattgacttatttgagtttatctact 894  Q
    ||||||||||||||||||||||||||||||    
T  30014000 tttggattgacttatttgagtttatctact 30014029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 563 - 618
Target Start/End: Complemental strand, 12735901 - 12735846
Alignment:
Q  563 taaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaat 618  Q
    ||||||||| |||||||||||||| || |||||||||||| |||||||||| ||||    
T  12735901 taaacagtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaat 12735846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 563 - 618
Target Start/End: Complemental strand, 12798728 - 12798673
Alignment:
Q  563 taaacagtgctgaatttgttgttgtttatagatgtggccagaccttattcagaaat 618  Q
    ||||||||| |||||||||||||| || |||||||||||| |||||||||| ||||    
T  12798728 taaacagtgttgaatttgttgttggttttagatgtggccaaaccttattcaaaaat 12798673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 39933403 - 39933348
Alignment:
Q  66 tatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 121  Q
    |||||||||||||||||||||||||| |||| ||||||| |||||  |||||||||    
T  39933403 tatagaccatatacattatttattcaatgaaattaaaaattgaaacgttgtttata 39933348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 9107239 - 9107203
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9107239 tttggattgacttatttgagtttatctagtgacataa 9107203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 22626810 - 22626870
Alignment:
Q  64 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 124  Q
    ||||||||||| |||||| |||||||   |||||||||||| |||||| ||||||||||||    
T  22626810 tatatagaccacatacatcatttatttcatgaatttaaaaattgaaaagttgtttataatt 22626870  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 32010094 - 32010058
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32010094 tttggattgacttatttgagtttatctactcacataa 32010058  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 32197882 - 32197846
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32197882 tttggattgacttttttgagtttatctactgacataa 32197846  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 27094316 - 27094355
Alignment:
Q  65 atatagaccatatacattatttattcattgaatttaaaaa 104  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  27094316 atatagaccatatacataatttattcaatgaatttaaaaa 27094355  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 869 - 900
Target Start/End: Complemental strand, 40111413 - 40111382
Alignment:
Q  869 gattgacttatttgagtttatctactgacata 900  Q
    ||||||||||||||||||||||||||||||||    
T  40111413 gattgacttatttgagtttatctactgacata 40111382  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 790 - 840
Target Start/End: Complemental strand, 12735664 - 12735614
Alignment:
Q  790 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 840  Q
    |||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  12735664 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12735614  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 790 - 840
Target Start/End: Complemental strand, 12798491 - 12798441
Alignment:
Q  790 gaaaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagca 840  Q
    |||||||||||||| || ||| |||||| ||||| ||||||||||||||||    
T  12798491 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12798441  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 865 - 903
Target Start/End: Complemental strand, 17369352 - 17369314
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataatc 903  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  17369352 tttggattgacttatttgaacttatctactgacataatc 17369314  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 8955400 - 8955351
Alignment:
Q  75 tatacattatttattcattgaatttaaaaagtgaaaaattgtttataatt 124  Q
    |||| |||||||||||| | |||||||||||| |||| ||||||||||||    
T  8955400 tatatattatttattcaataaatttaaaaagtaaaaagttgtttataatt 8955351  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 864 - 901
Target Start/End: Original strand, 14706204 - 14706241
Alignment:
Q  864 atttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  14706204 atttggattgacttatttgagcttacctactgacataa 14706241  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 19206422 - 19206393
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  19206422 cctggcaaaatgcaacatttcttgtagtga 19206393  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 21488357 - 21488280
Alignment:
Q  65 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttataatttggacctgacggagtatt 142  Q
    |||||||||| ||||||||||||| || |||||| ||||||| ||| |||  |||||| | |||| ||| ||||||||    
T  21488357 atatagaccaaatacattatttatgcaatgaattaaaaaagtcaaatatttcttataaataggacatgagggagtatt 21488280  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 34631984 - 34632013
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  34631984 cctggcaaaatgcaacatttcttgtagtga 34632013  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 947 - 1000
Target Start/End: Original strand, 35135751 - 35135804
Alignment:
Q  947 tgactttgttttatcttttgtaatagaaatatcatatacgtaagaacttatatg 1000  Q
    ||||||| ||||||||||||| ||||||||||| ||||| |||  |||||||||    
T  35135751 tgactttattttatcttttgttatagaaatatcttatacataaacacttatatg 35135804  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 865 - 894
Target Start/End: Original strand, 40335794 - 40335823
Alignment:
Q  865 tttggattgacttatttgagtttatctact 894  Q
    ||||||||||||||||||||||||||||||    
T  40335794 tttggattgacttatttgagtttatctact 40335823  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Complemental strand, 4308926 - 4308890
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4308926 tttggattggcttatttgagtttatctactgacataa 4308890  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 865 - 901
Target Start/End: Original strand, 30536886 - 30536922
Alignment:
Q  865 tttggattgacttatttgagtttatctactgacataa 901  Q
    |||||||||||||||||||||||||||||| ||||||    
T  30536886 tttggattgacttatttgagtttatctacttacataa 30536922  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 870 - 901
Target Start/End: Original strand, 7351597 - 7351628
Alignment:
Q  870 attgacttatttgagtttatctactgacataa 901  Q
    ||||||||||||||||||||||||||||||||    
T  7351597 attgacttatttgagtttatctactgacataa 7351628  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 133207 - 133257
Alignment:
Q  65 atatagaccatatacattatttattcattgaatttaaaaagtgaaaaattg 115  Q
    |||||||||| ||||||| |||||||| ||||  |||||||||||||||||    
T  133207 atatagaccacatacattgtttattcaatgaacctaaaaagtgaaaaattg 133257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 20133 - 20162
Alignment:
Q  21 cctggcaaaatgcaacatttcttgtagtga 50  Q
    ||||||||||||||||||||||||||||||    
T  20133 cctggcaaaatgcaacatttcttgtagtga 20162  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 947 - 1000
Target Start/End: Original strand, 1163 - 1216
Alignment:
Q  947 tgactttgttttatcttttgtaatagaaatatcatatacgtaagaacttatatg 1000  Q
    ||||||| ||||||||||||| ||||||||| | ||||| |||| |||||||||    
T  1163 tgactttattttatcttttgttatagaaatagcttatacataagcacttatatg 1216  T

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Target: scaffold0275 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 947 - 1000
Target Start/End: Complemental strand, 2812 - 2759
Alignment:
Q  947 tgactttgttttatcttttgtaatagaaatatcatatacgtaagaacttatatg 1000  Q
    ||||||| ||||||||||||| ||||||||| | ||||| |||| |||||||||    
T  2812 tgactttattttatcttttgttatagaaatagcttatacataagcacttatatg 2759  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 153979 - 154036
Alignment:
Q  64 tatatagaccatatacattatttattcattgaatttaaaaagtgaaaaattgtttata 121  Q
    ||||||||||| |||||| ||||||| | ||||| ||||||||||||| || ||||||    
T  153979 tatatagaccacatacatcatttattaaatgaatctaaaaagtgaaaagttttttata 154036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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