View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4395-Insertion-2 (Length: 1104)
Name: NF4395-Insertion-2
Description: NF4395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4395-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 820; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 122 - 1071
Target Start/End: Complemental strand, 37161173 - 37160217
Alignment:
| Q |
122 |
tgtaggtgattacagtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgc |
221 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37161173 |
tgtaggtcattacagtatttgcagttgtaagagtgattagatccaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgc |
37161074 |
T |
|
| Q |
222 |
tgaatatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggtcagtttttt |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37161073 |
tgaatatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggtcagtttttt |
37160974 |
T |
|
| Q |
322 |
ctatacatgtctacttttcattccttaggtaattgtgatttttccaaattcattgtaaatctaagtatacacttaattaattgcaggagtaccggggttt |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37160973 |
ctatacatgtctacttttcattccttaggtaattgtgatttttccaaattcattgtaaatctaagtatacacttaattaattgcaggagtaccggggttt |
37160874 |
T |
|
| Q |
422 |
gcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgctgtcggtataaatgctggccagc |
521 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37160873 |
gcagcatgggtgggaatagaggtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgctgtcggtataaatgctggccagc |
37160774 |
T |
|
| Q |
522 |
tggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaacctatcatttcttttcnnnnnnnctctatttgaaatcactaga |
621 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37160773 |
tggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaacctatcatttcttttctttttttctctatttgaaatcactaga |
37160674 |
T |
|
| Q |
622 |
tcatggacccgtgcgatgcatgttgggcacaattgtttgaaattgtatatatctaacaaacttcaagcacatccatagtttgacagaggagaaaacaata |
721 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
37160673 |
tcatggacccgtgcgatgcatgttgggcataattgtttgaaattgtatatatctaacagacttcaagcacatccatagtgtgacagaggagaaaacaata |
37160574 |
T |
|
| Q |
722 |
cgtcattaaaaaacatgtaatcttttgctaaaacatattgcaacatggtaggaaataaattacaaaaagaatatagatggttagcaaatgacagaaaaac |
821 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37160573 |
cgtcattaaaaaatatgtaatcttttgctaaaacatattgcaacatggtaggaaataaattacaaaaagaaaatagatggttagcaaatgacagaaaaac |
37160474 |
T |
|
| Q |
822 |
accatgaaatgaatgagaaagtgaagatgatacattttcatcttgtttactttatttggaaacatcatatttccatcagctacaagtctaccagactacc |
921 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37160473 |
accatgaaatgaatgagaaagtaaagatgacacattttcatcttgtttactttatttggaaaaatcatatttccatcagctacaagtctaccagactacc |
37160374 |
T |
|
| Q |
922 |
acattgtcctactaacac-atggctagaaacacccaacaaaggtttcttagaca-ataaacaatgaaagg-agtagcacaa-tcatagtgaaaatcatgg |
1017 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
37160373 |
acattgtcctactaacacaatggctagaaacacctaaaaaaggtttcttagacagataaacaatgaaaggaagtagcacaattcatagtgaaaatcatgg |
37160274 |
T |
|
| Q |
1018 |
ctcaactgatggaa-ttcgatact-atctttacacacc-tctagtgcagatgaagta |
1071 |
Q |
| |
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||||| |||||||| ||||||| | ||||||||||||| |||||||||||||||||| |
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|
| T |
37160273 |
ctcaagtgatggaatttcgatagtaatctttacacaccttctagtgcagatgaagta |
37160217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 399 - 582
Target Start/End: Complemental strand, 37149762 - 37149579
Alignment:
| Q |
399 |
taattgcaggagtaccggggtttgcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgc |
498 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||| ||||||| | | |||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
37149762 |
taattgcaggagtacctgggtttgcagcatggttgggaatagaggtactaggaaacccaaagccagcatcaaatgtgttcatatctgctgcatctggtgc |
37149663 |
T |
|
| Q |
499 |
tgtcggtataaatgctggccagctggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaaccta |
582 |
Q |
| |
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||| ||||| | |||||| || || |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
37149662 |
tgttggtatgattgctggtcaacttgctaagatacgaggatgtcgggtcattggcagcactggctctgatgataaggtaaccta |
37149579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 400 - 592
Target Start/End: Complemental strand, 37153722 - 37153530
Alignment:
| Q |
400 |
aattgcaggagtaccggggtttgcagcatgggtgggaatagacgtactagcagatccaaagccaggatcaaatgtgttcatatctgctgcatctggtgct |
499 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||| ||| ||| ||||||||| ||||||||| |||| |||||||||||||||||||||||| |
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|
| T |
37153722 |
aattgcaggagtagcggggtttgcagcatggttgggaatagaggtaataggagatccaaaaccaggatcacatgtattcatatctgctgcatctggtgct |
37153623 |
T |
|
| Q |
500 |
gtcggtataaatgctggccagctggctaagatccgaggatgtagggtcatcggcagcactggctctgatgataaggtaacctatcatttcttt |
592 |
Q |
| |
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|| ||||| | |||||||||||| |||||||||||||||||| |||||||||| ||||| ||||| ||||||||||| || |||| ||||||| |
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| T |
37153622 |
gtaggtatgagtgctggccagcttgctaagatccgaggatgtcgggtcatcggaagcacgggctccgatgataaggtgacttatcttttcttt |
37153530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 125 - 312
Target Start/End: Complemental strand, 37150290 - 37150103
Alignment:
| Q |
125 |
aggtgattacagtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgctga |
224 |
Q |
| |
|
||||| ||||| |||||| |||||||| || ||| |||| ||||||||||||||||||||||||||||| ||||||||| | ||| || |||||||| |
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| T |
37150290 |
aggtgcttacaacatttgcggttgtaagggtaattcgatcgaaggatagtaaatacagtgagggggatatccttttgaatggatatggtctcgttgctga |
37150191 |
T |
|
| Q |
225 |
atatagtattgtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggt |
312 |
Q |
| |
|
||||| |||||||| |||||||| |||| ||||||||||||| || | ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
37150190 |
gtatagcattgtaccctcttctcatataattagaaaaattgatcctgctaatgggatttcactgtctgattatcttggttctttaggt |
37150103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 135 - 312
Target Start/End: Complemental strand, 37155426 - 37155249
Alignment:
| Q |
135 |
agtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattcttttgaatccaaatgctcctgttgctgaatatagtatt |
234 |
Q |
| |
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|||||||||| |||||||||| ||| ||||||||||||||||||||| ||| || ||||| ||||||||| |||| | |||||||| ||||||||| |
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| T |
37155426 |
agtatttgcaattgtaagagtaattcgatcaaaggatagtaaatacactgaaggagatatccttttgaatgggaatggttacgttgctgagtatagtatt |
37155327 |
T |
|
| Q |
235 |
gtaccttcttctcaaataactagaaaaattgatacttcaaatgggatttctttgtctgattatcttggttctttaggt |
312 |
Q |
| |
|
||||| |||||| | |||| || ||||||||| || | ||||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
37155326 |
gtaccctcttctgacataatgaggaaaattgatcctgctaatgggatttcactgtcagattatcttggtactttaggt |
37155249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 37161271 - 37161231
Alignment:
| Q |
8 |
agaaggccttttcatttcacaatatcaacttaatcaggtac |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37161271 |
agaaggccttttcatttcacaatatcaacttaatcaggtac |
37161231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 37150543 - 37150504
Alignment:
| Q |
9 |
gaaggccttttcatttcacaatatcaacttaatcaggtac |
48 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37150543 |
gaaggccttttcattccacaatatcaacttaatcaggtac |
37150504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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