View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4395-Insertion-3 (Length: 760)

Name: NF4395-Insertion-3
Description: NF4395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4395-Insertion-3
NF4395-Insertion-3
[»] chr8 (1 HSPs)
chr8 (8-740)||(33725115-33725854)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 740
Target Start/End: Complemental strand, 33725854 - 33725115
Alignment:
Q  8 acataaacgtcataaacaagacaccacttatattgattataaactaagcacatgcatcatgcatgcaggcannnnnnnnccccttcgttttgatcgatcc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  33725854 acataaacgtcataaacaagacaccacttatattgattataaactaagcacatgcatcatgcatgcaggcattttttttccccttcgttttgatcgatcc 33725755  T
Q  108 tctgcttgcaagggttgaccaaaatgtcagttaattaatccatatagtttataaagaaaattataatatagcaagattacaatccacttgataattcnnn 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  33725754 tctgcttgcaagggttgaccaaaatgtcagttaattaatccatatagtttataaagaaaattataatatagcaagattacaatccacttgataattcttt 33725655  T
Q  208 nnnnnnnnnnctggttacatttcgtttgtcacatccaaaacatgaatnnnnnnnnnnnnnnnnttgatatggctcaataaacaagttcctcaagcacaag 307  Q
              |||||||||||||||||||||||||||||||||||||                |||||||||||||||||||| ||||||||||||||||    
T  33725654 tttagtttttctggttacatttcgtttgtcacatccaaaacatgaataaaaaaataaaataa-ttgatatggctcaataaacatgttcctcaagcacaag 33725556  T
Q  308 atgctgtcatgctgacacagtaaggtttgctaatttcatattataacataaatttgatcaatggtgttccattaaaatacatgattgtttgaagaatacg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33725555 atgctgtcatgctgacacagtaaggtttgctaatttcatattataacataaatttgatcaatggtgttccattaaaatacatgattgtttgaagaatacg 33725456  T
Q  408 gtagtggatcattgtttatttggacttgctgaatgtacttggttctttannnnnnnnngctatgaagatgcactcgttcttctattaaattaaattatca 507  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||         |||||||| |||||||||||| ||||||||||||||||||||    
T  33725455 gtagtggatcattgtttatttggacttgttgaatgtacttggttcttta-ttttttttgctatgaaaatgcactcgttcctctattaaattaaattatca 33725357  T
Q  508 ttttgcatttgtc-----nnnnnnnnnntataattttgcatggaaaggggaatttgaattattaggtctagcaataaatacctcaccttta-gggctgcg 601  Q
    |||||||||||||               ||| ||||||||  || ||  ||| | ||| ||||  ||||||||||||||| |||| ||||| ||||||||    
T  33725356 ttttgcatttgtcaaaaaaaaaaaaaggtatcattttgcactgagagttgaaatagaaatattgagtctagcaataaataactcagctttaggggctgcg 33725257  T
Q  602 gaaatagattctcctaattgg-gatttttttatattatcctannnnnnnnnnnccattaaaagg-aaacagaa-ag-aaaaccaaagactaaaataattc 697  Q
    |||||||||||| ||||||||  ||||||||||||||||  |            |||||||||| |||||||| || ||||| ||||| |||| ||||||    
T  33725256 gaaatagattcttctaattggtaatttttttatattatctaatttttttttt--cattaaaaggaaaacagaacagaaaaacaaaagattaaagtaattc 33725159  T
Q  698 gatgtttaaaaatcctatcgagtcgacggacaa-ataaaatcta 740  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||    
T  33725158 gatgtttaaaaattctatcgagtcgacggacaagataaaatcta 33725115  T

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