View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4395_high_1 (Length: 238)

Name: NF4395_high_1
Description: NF4395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4395_high_1
NF4395_high_1
[»] chr8 (6 HSPs)
chr8 (18-176)||(27865166-27865309)
chr8 (27-176)||(27888888-27889033)
chr8 (27-176)||(27947546-27947691)
chr8 (177-235)||(27865832-27865890)
chr8 (27-98)||(27970522-27970593)
chr8 (27-98)||(28027791-28027862)
[»] chr3 (1 HSPs)
chr3 (45-176)||(39676615-39676745)


Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 27865166 - 27865309
Alignment:
Q  18 gaagatagttgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattggtgttttcactttagaagtt 117  Q
    |||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||| ||||||||||||||||    
T  27865166 gaagatagttgcagatttgaaacgttccaaatcatcaaa--------------taaagagtgcagggaaatttcaaattggtggtttcactttagaagtt 27865251  T
Q  118 atcaaaattcaagattcaaaagatttggaagaaacttgtcaaagaagtgtttaggtggt 176  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||    
T  27865252 atcaaaattcaagattcaaaaca-tcggaagaaacttgtcaaagaagtttttaggtggt 27865309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 27888888 - 27889033
Alignment:
Q  27 tgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattggtgttttcactttagaagttatcaaaatt 126  Q
    |||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||   ||||| || |||||||||||| |||    
T  27888888 tgcatattagaagcgttccaaatcatcaaaaaataactaccatgtaaagagtgcaagagaatttcaaattgg---tttcatttgagaagttatcaacatt 27888984  T
Q  127 caagattcaaaagatttggaagaaacttgtcaaagaagtgtttaggtggt 176  Q
    |||||||||||||| ||||||| | |||||||||||||| ||||||||||    
T  27888985 caagattcaaaaga-ttggaaggagcttgtcaaagaagtttttaggtggt 27889033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 27947546 - 27947691
Alignment:
Q  27 tgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattggtgttttcactttagaagttatcaaaatt 126  Q
    |||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||   ||||| || |||||||||||| |||    
T  27947546 tgcatattagaagcgttccaaatcatcaaaaaataactaccatgtaaagagtgcaagagaatttcaaattgg---tttcatttgagaagttatcaacatt 27947642  T
Q  127 caagattcaaaagatttggaagaaacttgtcaaagaagtgtttaggtggt 176  Q
    |||||||||||||| ||||||| | |||||||||||||| ||||||||||    
T  27947643 caagattcaaaaga-ttggaaggagcttgtcaaagaagtttttaggtggt 27947691  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 27865832 - 27865890
Alignment:
Q  177 catttatgatggatgtcatttttgatatatttaggtggaccggagcatgacgaaggaga 235  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||    
T  27865832 catttatgatggatgtcatttttgatatatttaggtggacggaagcatgatgaaggaga 27865890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 27970522 - 27970593
Alignment:
Q  27 tgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattgg 98  Q
    |||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||    
T  27970522 tgcatattagaagcgttccaaatcatcaaaaaataactaccatgtaaagagtgcaagagaatttcaaattgg 27970593  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 28027791 - 28027862
Alignment:
Q  27 tgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattgg 98  Q
    |||| ||| ||| |||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||    
T  28027791 tgcatattagaagcgttccaaatcatcaaaaaataactaccatgtaaagagtgcaagagaatttcaaattgg 28027862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 39676615 - 39676745
Alignment:
Q  45 caaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattggtgttttcactttagaagttatcaaaattcaagattcaaaagatttg 144  Q
    |||||||| ||||  |||||||||||||||||||||| |  || |||||||  ||| || ||||| |||  |||||||  |||||  ||||||||| |||    
T  39676615 caaatcataaaaatgtaactaccatataaagagtgcaagtgaagttcaaatgagtggttacacttgagattttatcaactttcaaatttcaaaaga-ttg 39676713  T
Q  145 gaagaaacttgtcaaagaagtgtttaggtggt 176  Q
    || | |||||||||| ||||| ||||||||||    
T  39676714 gagggaacttgtcaatgaagtttttaggtggt 39676745  T

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