View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4395_low_1 (Length: 238)
Name: NF4395_low_1
Description: NF4395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4395_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 27865166 - 27865309
Alignment:
| Q |
18 |
gaagatagttgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattggtgttttcactttagaagtt |
117 |
Q |
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| T |
27865166 |
gaagatagttgcagatttgaaacgttccaaatcatcaaa--------------taaagagtgcagggaaatttcaaattggtggtttcactttagaagtt |
27865251 |
T |
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| Q |
118 |
atcaaaattcaagattcaaaagatttggaagaaacttgtcaaagaagtgtttaggtggt |
176 |
Q |
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| T |
27865252 |
atcaaaattcaagattcaaaaca-tcggaagaaacttgtcaaagaagtttttaggtggt |
27865309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 27888888 - 27889033
Alignment:
| Q |
27 |
tgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattggtgttttcactttagaagttatcaaaatt |
126 |
Q |
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| T |
27888888 |
tgcatattagaagcgttccaaatcatcaaaaaataactaccatgtaaagagtgcaagagaatttcaaattgg---tttcatttgagaagttatcaacatt |
27888984 |
T |
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| Q |
127 |
caagattcaaaagatttggaagaaacttgtcaaagaagtgtttaggtggt |
176 |
Q |
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| T |
27888985 |
caagattcaaaaga-ttggaaggagcttgtcaaagaagtttttaggtggt |
27889033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 27947546 - 27947691
Alignment:
| Q |
27 |
tgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattggtgttttcactttagaagttatcaaaatt |
126 |
Q |
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| T |
27947546 |
tgcatattagaagcgttccaaatcatcaaaaaataactaccatgtaaagagtgcaagagaatttcaaattgg---tttcatttgagaagttatcaacatt |
27947642 |
T |
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| Q |
127 |
caagattcaaaagatttggaagaaacttgtcaaagaagtgtttaggtggt |
176 |
Q |
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| T |
27947643 |
caagattcaaaaga-ttggaaggagcttgtcaaagaagtttttaggtggt |
27947691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 27865832 - 27865890
Alignment:
| Q |
177 |
catttatgatggatgtcatttttgatatatttaggtggaccggagcatgacgaaggaga |
235 |
Q |
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| T |
27865832 |
catttatgatggatgtcatttttgatatatttaggtggacggaagcatgatgaaggaga |
27865890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 27970522 - 27970593
Alignment:
| Q |
27 |
tgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattgg |
98 |
Q |
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| T |
27970522 |
tgcatattagaagcgttccaaatcatcaaaaaataactaccatgtaaagagtgcaagagaatttcaaattgg |
27970593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 28027791 - 28027862
Alignment:
| Q |
27 |
tgcagatttgaaacgttccaaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattgg |
98 |
Q |
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| T |
28027791 |
tgcatattagaagcgttccaaatcatcaaaaaataactaccatgtaaagagtgcaagagaatttcaaattgg |
28027862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 39676615 - 39676745
Alignment:
| Q |
45 |
caaatcatcaaaaaataactaccatataaagagtgcagggaaatttcaaattggtgttttcactttagaagttatcaaaattcaagattcaaaagatttg |
144 |
Q |
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| T |
39676615 |
caaatcataaaaatgtaactaccatataaagagtgcaagtgaagttcaaatgagtggttacacttgagattttatcaactttcaaatttcaaaaga-ttg |
39676713 |
T |
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| Q |
145 |
gaagaaacttgtcaaagaagtgtttaggtggt |
176 |
Q |
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| T |
39676714 |
gagggaacttgtcaatgaagtttttaggtggt |
39676745 |
T |
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