View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4396-Insertion-1 (Length: 1069)

Name: NF4396-Insertion-1
Description: NF4396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4396-Insertion-1
NF4396-Insertion-1
[»] chr1 (36 HSPs)
chr1 (8-954)||(10089373-10090313)
chr1 (550-660)||(7218073-7218186)
chr1 (557-694)||(39347973-39348113)
chr1 (545-661)||(30371105-30371224)
chr1 (590-691)||(17269177-17269279)
chr1 (561-702)||(4200145-4200289)
chr1 (636-695)||(870968-871027)
chr1 (560-655)||(30257646-30257744)
chr1 (560-658)||(31517749-31517850)
chr1 (559-655)||(5592693-5592792)
chr1 (628-695)||(23895259-23895326)
chr1 (567-661)||(25479538-25479635)
chr1 (597-658)||(27738228-27738290)
chr1 (597-649)||(25006082-25006135)
chr1 (602-661)||(28467360-28467420)
chr1 (614-697)||(30259552-30259636)
chr1 (561-661)||(34179882-34179985)
chr1 (630-694)||(38651491-38651555)
chr1 (615-694)||(44032065-44032145)
chr1 (602-661)||(49517027-49517087)
chr1 (557-694)||(3224347-3224487)
chr1 (461-496)||(21002275-21002310)
chr1 (461-496)||(41505794-41505829)
chr1 (540-655)||(45205031-45205149)
chr1 (525-587)||(11639390-11639452)
chr1 (630-696)||(46499936-46500002)
chr1 (631-680)||(4549804-4549853)
chr1 (639-680)||(7137092-7137133)
chr1 (630-695)||(7274021-7274086)
chr1 (613-661)||(15360851-15360900)
chr1 (638-687)||(17420134-17420183)
chr1 (633-686)||(26184683-26184736)
chr1 (467-496)||(28837274-28837303)
chr1 (602-697)||(29045965-29046062)
chr1 (560-626)||(45975683-45975751)
chr1 (602-695)||(46504271-46504364)
[»] chr4 (34 HSPs)
chr4 (559-661)||(11802491-11802596)
chr4 (562-671)||(10192231-10192342)
chr4 (550-696)||(54325036-54325185)
chr4 (602-705)||(45128363-45128467)
chr4 (530-660)||(2996531-2996664)
chr4 (630-702)||(51555949-51556021)
chr4 (597-693)||(8422887-8422982)
chr4 (590-679)||(35958594-35958684)
chr4 (540-649)||(20936218-20936330)
chr4 (614-694)||(41606110-41606191)
chr4 (562-697)||(30207582-30207719)
chr4 (558-661)||(49219096-49219202)
chr4 (641-695)||(32066502-32066556)
chr4 (621-691)||(41088311-41088380)
chr4 (602-695)||(46796941-46797035)
chr4 (560-661)||(17884025-17884129)
chr4 (605-693)||(18630605-18630694)
chr4 (562-694)||(14011158-14011293)
chr4 (567-695)||(24929416-24929547)
chr4 (615-694)||(30024624-30024704)
chr4 (541-592)||(6978952-6979003)
chr4 (557-627)||(9841058-9841129)
chr4 (635-694)||(36734817-36734876)
chr4 (602-664)||(55870394-55870457)
chr4 (613-670)||(4071830-4071888)
chr4 (640-694)||(4471095-4471149)
chr4 (461-495)||(29126178-29126212)
chr4 (630-694)||(4191663-4191728)
chr4 (557-627)||(8468940-8469012)
chr4 (541-582)||(22684511-22684552)
chr4 (630-695)||(22684598-22684663)
chr4 (602-693)||(32920453-32920543)
chr4 (618-702)||(44319866-44319950)
chr4 (635-696)||(47970240-47970301)
[»] chr8 (20 HSPs)
chr8 (630-695)||(14482125-14482190)
chr8 (597-693)||(34770817-34770914)
chr8 (505-582)||(14949905-14949982)
chr8 (550-695)||(28769338-28769486)
chr8 (597-661)||(10437842-10437906)
chr8 (560-660)||(31862451-31862554)
chr8 (602-688)||(42597331-42597418)
chr8 (614-694)||(7026655-7026736)
chr8 (557-654)||(12361156-12361256)
chr8 (597-697)||(30013140-30013240)
chr8 (590-649)||(6509344-6509404)
chr8 (530-658)||(11183505-11183636)
chr8 (630-694)||(29699178-29699242)
chr8 (630-694)||(35534943-35535007)
chr8 (635-695)||(39392748-39392808)
chr8 (635-694)||(14949812-14949871)
chr8 (635-689)||(26370917-26370971)
chr8 (615-664)||(42237488-42237538)
chr8 (462-496)||(44792776-44792810)
chr8 (615-695)||(34788493-34788574)
[»] chr6 (25 HSPs)
chr6 (552-661)||(4006671-4006783)
chr6 (630-702)||(7713941-7714013)
chr6 (530-702)||(1810284-1810454)
chr6 (614-695)||(22742289-22742371)
chr6 (622-695)||(29269819-29269892)
chr6 (564-694)||(33911295-33911427)
chr6 (630-702)||(8349746-8349818)
chr6 (597-695)||(2727904-2728003)
chr6 (636-695)||(13360658-13360717)
chr6 (567-694)||(32386579-32386709)
chr6 (602-695)||(29274282-29274376)
chr6 (566-702)||(1497896-1498036)
chr6 (561-661)||(281858-281961)
chr6 (597-655)||(2112164-2112222)
chr6 (602-695)||(2514625-2514719)
chr6 (561-657)||(3155137-3155235)
chr6 (458-496)||(4163273-4163311)
chr6 (458-496)||(4224894-4224932)
chr6 (541-587)||(9027612-9027658)
chr6 (630-696)||(34405027-34405093)
chr6 (633-694)||(3217275-3217336)
chr6 (557-627)||(4246402-4246474)
chr6 (630-695)||(24774681-24774746)
chr6 (615-664)||(27857329-27857378)
chr6 (550-587)||(27894080-27894117)
[»] chr3 (16 HSPs)
chr3 (560-694)||(1816506-1816644)
chr3 (616-697)||(39971240-39971320)
chr3 (641-695)||(25964365-25964419)
chr3 (565-627)||(14548735-14548799)
chr3 (633-694)||(16790441-16790502)
chr3 (630-695)||(44374726-44374791)
chr3 (604-664)||(48397600-48397661)
chr3 (603-697)||(22214735-22214830)
chr3 (602-697)||(23530237-23530335)
chr3 (635-690)||(23793517-23793571)
chr3 (635-694)||(24268242-24268301)
chr3 (559-702)||(38462197-38462343)
chr3 (636-695)||(41028939-41028998)
chr3 (540-582)||(1823901-1823943)
chr3 (596-665)||(37788813-37788883)
chr3 (596-692)||(47217283-47217380)
[»] scaffold0024 (1 HSPs)
scaffold0024 (561-695)||(27499-27636)
[»] chr7 (24 HSPs)
chr7 (602-679)||(1417203-1417281)
chr7 (557-661)||(48157126-48157233)
chr7 (635-693)||(27492720-27492778)
chr7 (597-658)||(30456498-30456560)
chr7 (603-695)||(49060463-49060556)
chr7 (560-664)||(38010668-38010775)
chr7 (547-702)||(3610736-3610894)
chr7 (630-692)||(24973870-24973932)
chr7 (630-695)||(11721308-11721373)
chr7 (602-693)||(30496629-30496721)
chr7 (563-656)||(39505919-39506014)
chr7 (540-587)||(44808192-44808239)
chr7 (530-661)||(46081990-46082127)
chr7 (540-587)||(47134746-47134793)
chr7 (639-697)||(1413169-1413227)
chr7 (602-703)||(9527143-9527245)
chr7 (602-671)||(17989076-17989146)
chr7 (614-695)||(35536030-35536112)
chr7 (561-647)||(44821930-44822019)
chr7 (557-611)||(6601375-6601431)
chr7 (557-619)||(24363607-24363671)
chr7 (597-689)||(28340892-28340985)
chr7 (633-694)||(30751441-30751502)
chr7 (641-694)||(45078217-45078270)
[»] chr5 (31 HSPs)
chr5 (557-664)||(8651359-8651467)
chr5 (630-695)||(35095865-35095930)
chr5 (561-627)||(37588370-37588438)
chr5 (628-689)||(39128568-39128629)
chr5 (557-694)||(35960338-35960477)
chr5 (597-687)||(4855629-4855720)
chr5 (550-661)||(14295463-14295577)
chr5 (569-686)||(31030148-31030266)
chr5 (562-655)||(10272442-10272538)
chr5 (596-692)||(18704083-18704179)
chr5 (606-694)||(19177403-19177492)
chr5 (561-695)||(35135676-35135809)
chr5 (561-627)||(37526209-37526277)
chr5 (547-628)||(2880543-2880626)
chr5 (563-680)||(6593238-6593357)
chr5 (642-702)||(10391269-10391329)
chr5 (593-696)||(36539668-36539772)
chr5 (635-691)||(37063161-37063217)
chr5 (614-677)||(14932231-14932294)
chr5 (636-695)||(20982223-20982282)
chr5 (602-696)||(32059642-32059736)
chr5 (597-695)||(32172576-32172675)
chr5 (630-664)||(11615462-11615496)
chr5 (630-695)||(11835199-11835265)
chr5 (633-702)||(6738492-6738561)
chr5 (635-692)||(7096214-7096271)
chr5 (630-671)||(10303748-10303789)
chr5 (633-694)||(19113202-19113263)
chr5 (633-690)||(19460050-19460107)
chr5 (654-695)||(23999079-23999120)
chr5 (608-664)||(42181151-42181208)
[»] chr2 (22 HSPs)
chr2 (597-694)||(17221588-17221686)
chr2 (597-658)||(11513858-11513920)
chr2 (590-697)||(17952742-17952850)
chr2 (560-664)||(22681194-22681301)
chr2 (604-697)||(37053515-37053609)
chr2 (616-664)||(6546932-6546981)
chr2 (641-694)||(10190203-10190256)
chr2 (459-496)||(40837350-40837387)
chr2 (597-696)||(10143094-10143194)
chr2 (606-661)||(10285310-10285366)
chr2 (615-694)||(18962104-18962184)
chr2 (559-655)||(43141834-43141933)
chr2 (461-496)||(3312197-3312232)
chr2 (530-585)||(13224232-13224287)
chr2 (561-655)||(9395093-9395190)
chr2 (590-695)||(28803547-28803653)
chr2 (548-627)||(39983334-39983415)
chr2 (616-688)||(28902007-28902080)
chr2 (628-693)||(31461363-31461428)
chr2 (630-695)||(33197321-33197386)
chr2 (637-702)||(34339039-34339104)
chr2 (545-654)||(35485881-35485993)
[»] scaffold0654 (1 HSPs)
scaffold0654 (630-703)||(6719-6792)
[»] scaffold0014 (1 HSPs)
scaffold0014 (630-703)||(116638-116711)
[»] scaffold0590 (1 HSPs)
scaffold0590 (615-693)||(1140-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (615-693)||(2756-2835)
[»] scaffold0100 (1 HSPs)
scaffold0100 (596-694)||(42541-42639)
[»] scaffold0053 (1 HSPs)
scaffold0053 (602-686)||(20111-20196)


Alignment Details
Target: chr1 (Bit Score: 847; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 8 - 954
Target Start/End: Complemental strand, 10090313 - 10089373
Alignment:
Q  8 agatttactgtaaggtgaaaaatgcatagcagtaaaaagaaaacaaatatatttggacatnnnnnnngcatacatttcttacctgcgaacaactgccgtg 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||    
T  10090313 agatttactgtaaggtgaaaaatgtatagcagtaaaaagaaaacaaatatatttggacataaaaaaagcatgcatttcttacctgcgaacaactgccgtg 10090214  T
Q  108 tctccatgaccagagcaaactatcatcatagcattagttggtaatgacttatacagtttatgaattctaacatccatgcgagcaacaatttccttcagtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10090213 tctccatgaccagagcaaactatcatcatagcattagttggtaatgacttatacagtttatgaattctaacatccatgcgagcaacaatttccttcagtt 10090114  T
Q  208 cagcagatatattcgacttgaggtctttccctttcgaagaactcttctgacatgtatttaatgcaatcatctctgcaagttttttatttaagctttctga 307  Q
    ||||||||||||||||||||||  ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10090113 cagcagatatattcgacttgagacctttccctttcgaagaacc------acatgtatttaatgcaatcatctctgcaagttttttatttaagctttctga 10090020  T
Q  308 atcctcagcttgtttcttcaagtatgagtgtaactctgagaattgagtccaaataaattgcaccttttcattcttcaactgaaacagaaaaggtaagaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10090019 atcctcagcttgtttcttcaagtatgagtgtaactctgaaaattgagtccaaataaattgcaccttttcattcttcaactgaaacagaaaaggtaagaaa 10089920  T
Q  408 taagtaaagaccatttgtaactcttaataaaaaagaagccacttgcaaacataggcttgttttgattggcttatttgagcttatctactctactgatata 507  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10089919 aaagtaaagaccatttgtaactcttaataaaaaagaagacacttgcaaacataggcttgttttgattggcttatttgagcttatctactctactgatata 10089820  T
Q  508 aacacttgttagacttcttagaagagcttaataaaataactaatgatacgtccataagctgttttcagcttattttcatacactccagaatagattatga 607  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10089819 aacacttgtcagactgcttagaagagcttaataaaataactaatgatacgtccataagctgttttcagcttattttcatacactccaaaatagattatga 10089720  T
Q  608 aaaccacttatagcttatatagaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttatagcca 707  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10089719 aaaccacttatagcttatataaaacaatttgcctttattttaacttttgttataaaattagtttgaacataagaacttatatgataagtggttatagcca 10089620  T
Q  708 tgtaagatatctattacctccttgatggtttttgaaagtgcgtcttcatcagatgtcaccggaattgcgttagaggactcagaggcaaatcgttttacta 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10089619 tgtaagatatctattacctccttgatggtttttgaaagtgcgtcttcatcagatgtcaccggaattgcgttagaggactcagaggcaaatcgttttacta 10089520  T
Q  808 tcgatatgtcatcaatcattgaagaagtcttgccagactcgcccaaaatggaaaggagcttttttcgcgtaaaggatggagcggcgccaaagctaggccc 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10089519 tcgatatgtcatcaatcattgaagaagtcttgccagactcgcccaaaatggaaaggagcttttttcgcgtaaaggatggagcggcgccaaagctaggccc 10089420  T
Q  908 tgtttcaagagtaaatgccgagagcatgtcaaagcagttatgcaaac 954  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10089419 tgtttcaagagtaaatgccgagagcatgtcaaagcagttatgcaaac 10089373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 550 - 660
Target Start/End: Original strand, 7218073 - 7218186
Alignment:
Q  550 atgatacgtccataagctgttttcagcttattttcataca--ctccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttatt 646  Q
    |||| |||| || |||||||||||| ||||||||||||    |||||| |||| |||||||||| ||||||||||||||| | |||||||||||||||||    
T  7218073 atgacacgttcacaagctgttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaatttgactttatt 7218172  T
Q  647 ttaacttttgttat 660  Q
    ||| ||||| ||||    
T  7218173 ttaccttttattat 7218186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 557 - 694
Target Start/End: Original strand, 39347973 - 39348113
Alignment:
Q  557 gtccataagctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaactt 653  Q
    ||||||||| |||||||||||||||| ||||  ||   ||| |||| |||||||||| ||||||||||| ||| ||||   || |||||||||||| |||    
T  39347973 gtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttatagcttgtatgagaatggttggactttattttatctt 39348072  T
Q  654 ttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||||  | ||||||||| ||||||||||||||||| ||||    
T  39348073 ttgttgcagaattagtttatacataagaacttatataataa 39348113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 545 - 661
Target Start/End: Complemental strand, 30371224 - 30371105
Alignment:
Q  545 aactaatgatacgtccataagctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttatat-agaacaatttgact 641  Q
    ||||||||| | ||||||||| ||||||||||||||||  |||| |||  || |||   |||||||||| ||||||||||||||| | |||||||||| |    
T  30371224 aactaatgacatgtccataagttgttttcagcttatttcaatacgctctccaaaatgtcttatgaaaacaacttatagcttatatgaaaacaatttgagt 30371125  T
Q  642 ttattttaacttttgttata 661  Q
    |||||||| |||||||||||    
T  30371124 ttattttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 590 - 691
Target Start/End: Complemental strand, 17269279 - 17269177
Alignment:
Q  590 ctccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttata 688  Q
    |||||| |||| |||||||||| |||||| |||||||| | ||||||||||||||||||| ||||||||| || || ||  || |||||||| |||||||    
T  17269279 ctccaggatagcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctagaaataacttatacataagcacttata 17269180  T
Q  689 tga 691  Q
    |||    
T  17269179 tga 17269177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 561 - 702
Target Start/End: Complemental strand, 4200289 - 4200145
Alignment:
Q  561 ataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgt 657  Q
    |||||||||||| ||||||||||||||  | |||||| |||  ||| |||||| |  |||||||||||| | ||||| |||||||||||||| |||||||    
T  4200289 ataagctgttttaagcttattttcataagccctccaggatatcttacgaaaacaatatatagcttatatgaaaacaacttgactttattttatcttttgt 4200190  T
Q  658 tataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    ||||||| ||  || || ||||  ||||| |||||||||| ||||    
T  4200189 tataaaaataacttatatataaacacttagatgataagtgcttat 4200145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 636 - 695
Target Start/End: Complemental strand, 871027 - 870968
Alignment:
Q  636 ttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||| |||||| |||||||||||||| |||||| |||||||| ||||||||||||||    
T  871027 ttgacttaattttatcttttgttataaaaatagtttatacataagcacttatatgataag 870968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 560 - 655
Target Start/End: Complemental strand, 30257744 - 30257646
Alignment:
Q  560 cataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatatag-aacaatttgactttattttaactttt 655  Q
    |||||||||||||||||||||||  |||  | |||||| |||| |||||||||| ||||| ||||||||| | |||| ||||||||||||||| |||||    
T  30257744 cataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaagcttatatggaaacagtttgactttattttatctttt 30257646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 560 - 658
Target Start/End: Original strand, 31517749 - 31517850
Alignment:
Q  560 cataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttg 656  Q
    ||||||||||||||||||||||||||||  | |||||  | |||||||||| ||  |||||||||||||| | | |||||| ||||||||||| ||||||    
T  31517749 cataagctgttttcagcttattttcataagctctccaagacagattatgaagacagcttatagcttatatgaaatcaatttaactttattttatcttttg 31517848  T
Q  657 tt 658  Q
    ||    
T  31517849 tt 31517850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 559 - 655
Target Start/End: Original strand, 5592693 - 5592792
Alignment:
Q  559 ccataagctgttttcagcttattttcatacactcc--agaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaactttt 655  Q
    ||||||| ||||| |||||||||||||||  |||   ||| ||| |||||||||| ||||||||||||||| | ||||||| |||||||||||| |||||    
T  5592693 ccataagttgtttccagcttattttcataagctcttaagactagcttatgaaaacaacttatagcttatatgacaacaattcgactttattttatctttt 5592792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 628 - 695
Target Start/End: Complemental strand, 23895326 - 23895259
Alignment:
Q  628 agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||| ||||| ||||||||| ||||||||||| || ||| || ||||||| |||||||||||||||    
T  23895326 agaacagtttgaatttattttatcttttgttatagaaatagcttatacataataacttatatgataag 23895259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 567 - 661
Target Start/End: Complemental strand, 25479635 - 25479538
Alignment:
Q  567 tgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttata 661  Q
    |||||||||||||||||||||  | ||| || |||| |||||||||| ||||||||| ||||| |  |||||||||| |||||||| |||| ||||||    
T  25479635 tgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaagacaatttgacgttattttatctttggttata 25479538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 597 - 658
Target Start/End: Original strand, 27738228 - 27738290
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgtt 658  Q
    |||| |||||||||| | ||||||||||||| | |||||||||||||||||||| ||||||||    
T  27738228 atagcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgtt 27738290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 597 - 649
Target Start/End: Original strand, 25006082 - 25006135
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttatttta 649  Q
    |||| |||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  25006082 atagcttatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 25006135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 602 - 661
Target Start/End: Original strand, 28467360 - 28467420
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttata 661  Q
    |||||||||| |||| |||||||||| | || ||||||||||||||||| |||||||||||    
T  28467360 ttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 614 - 697
Target Start/End: Original strand, 30259552 - 30259636
Alignment:
Q  614 cttatagcttatatagaa-caatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtg 697  Q
    ||||||||||||||  || || |||||||||||||||  |||||||||| || ||| |||| |||||| |||| |||||||||||    
T  30259552 cttatagcttatatcaaagcagtttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgataagtg 30259636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 561 - 661
Target Start/End: Original strand, 34179882 - 34179985
Alignment:
Q  561 ataagctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgt 657  Q
    ||||| |||||||||| ||||| |||| |||   ||| |||| ||||||||||   |||||||||| || | |||||||||||||||||||| |||||||    
T  34179882 ataagttgttttcagcgtatttccataaacttttcaggatagtttatgaaaacagtttatagcttagattaaaacaatttgactttattttatcttttgt 34179981  T
Q  658 tata 661  Q
    ||||    
T  34179982 tata 34179985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 630 - 694
Target Start/End: Original strand, 38651491 - 38651555
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||| ||||||| |||| ||||||||||| |||||| || |||||||| ||||| |||||||    
T  38651491 aacaattcgactttagtttatcttttgttatagaattagcttatacataagcacttacatgataa 38651555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 615 - 694
Target Start/End: Original strand, 44032065 - 44032145
Alignment:
Q  615 ttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||||| ||   | || |||||||  |||||||||||||    
T  44032065 ttatagcttatatgaaaacaatttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgataa 44032145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 602 - 661
Target Start/End: Complemental strand, 49517087 - 49517027
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttata 661  Q
    ||||||||||  ||||||||||| || | |||||||||||||||||||| |||||||||||    
T  49517087 ttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttata 49517027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 694
Target Start/End: Complemental strand, 3224487 - 3224347
Alignment:
Q  557 gtccataagctgttttcagcttattttcataca--ctccagaatagattatgaaaaccacttatagcttatatagaa--caatttgactttattttaact 652  Q
    ||||||||| |||| ||||||||||||||||    ||| ||||||| |||| |||||  | |||||||||||| |||  ||||||||||||| || | |     
T  3224487 gtccataagttgttctcagcttattttcataagttctctagaatagcttataaaaacaccctatagcttatat-gaattcaatttgactttacttgatcc 3224389  T
Q  653 tttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||||| || ||| || ||||| ||| ||||||||||||    
T  3224388 tttgttatataaatagcttatacattagagcttatatgataa 3224347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 496
Target Start/End: Complemental strand, 21002310 - 21002275
Alignment:
Q  461 ggcttgttttgattggcttatttgagcttatctact 496  Q
    ||||||||| ||||||||||||||||||||||||||    
T  21002310 ggcttgtttggattggcttatttgagcttatctact 21002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 496
Target Start/End: Complemental strand, 41505829 - 41505794
Alignment:
Q  461 ggcttgttttgattggcttatttgagcttatctact 496  Q
    ||||||||| ||||||||||||||||||||||||||    
T  41505829 ggcttgtttggattggcttatttgagcttatctact 41505794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 655
Target Start/End: Complemental strand, 45205149 - 45205031
Alignment:
Q  540 aaaataactaatgatacgtccataagctgttttcagcttattttcat--acactccagaatagattatgaaaaccacttatagcttatatag-aacaatt 636  Q
    |||| |||| |||||| |||| |||| |||||||||||||||| |||  || || ||  |||| |||||||||| |||| |||||||||| | || | ||    
T  45205149 aaaacaacttatgatatgtccctaagttgttttcagcttatttccatgaactctacatgatagcttatgaaaacaacttctagcttatatggaaatagtt 45205050  T
Q  637 tgactttattttaactttt 655  Q
    ||||||||||||| |||||    
T  45205049 tgactttattttatctttt 45205031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 525 - 587
Target Start/End: Original strand, 11639390 - 11639452
Alignment:
Q  525 ttagaagagcttaataaaataactaatgatacgtccataagctgttttcagcttattttcata 587  Q
    |||||||||||||  |||| | || |||| | |||||||||||||||| ||||||||||||||    
T  11639390 ttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcata 11639452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 630 - 696
Target Start/End: Original strand, 46499936 - 46500002
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagt 696  Q
    |||||||||||||||||||| ||||| ||||| || ||| || || ||||| ||||||||| |||||    
T  46499936 aacaatttgactttattttatcttttcttatagaaatagcttatagataagcacttatatgttaagt 46500002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 631 - 680
Target Start/End: Complemental strand, 4549853 - 4549804
Alignment:
Q  631 acaatttgactttattttaacttttgttataaaattagtttgtacataag 680  Q
    ||||||| ||||||||||| ||||||||||| || ||| |||||||||||    
T  4549853 acaatttaactttattttatcttttgttatagaaatagcttgtacataag 4549804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 639 - 680
Target Start/End: Original strand, 7137092 - 7137133
Alignment:
Q  639 actttattttaacttttgttataaaattagtttgtacataag 680  Q
    |||||||||||||||||||||||||| |||||| || |||||    
T  7137092 actttattttaacttttgttataaaaatagtttatatataag 7137133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 7274021 - 7274086
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||||||| | |||||||||||||| ||   | |||||||| | ||||||||||||    
T  7274021 aacaatttgactttatttcatcttttgttataaaaataacatatacataagcatttatatgataag 7274086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 613 - 661
Target Start/End: Complemental strand, 15360900 - 15360851
Alignment:
Q  613 acttatagcttatat-agaacaatttgactttattttaacttttgttata 661  Q
    ||||||||||||||| | |||| ||||||||||||||| |||||||||||    
T  15360900 acttatagcttatatgaaaacagtttgactttattttatcttttgttata 15360851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 687
Target Start/End: Complemental strand, 17420183 - 17420134
Alignment:
Q  638 gactttattttaacttttgttataaaattagtttgtacataagaacttat 687  Q
    |||||||||||| ||||| |||||||| |||||| |||||||| ||||||    
T  17420183 gactttattttatcttttcttataaaaatagtttatacataagtacttat 17420134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 686
Target Start/End: Complemental strand, 26184736 - 26184683
Alignment:
Q  633 aatttgactttattttaacttttgttataaaattagtttgtacataagaactta 686  Q
    ||||||||||||||||| ||||| ||||| || |||||| |||||||| |||||    
T  26184736 aatttgactttattttaccttttcttatagaaatagtttatacataagtactta 26184683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 28837274 - 28837303
Alignment:
Q  467 ttttgattggcttatttgagcttatctact 496  Q
    ||||||||||||||||||||||||||||||    
T  28837274 ttttgattggcttatttgagcttatctact 28837303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 697
Target Start/End: Original strand, 29045965 - 29046062
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgact-ttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtg 697  Q
    |||||||||| ||||||||||||||| ||||||||||| || ||  |||| ||||||||||| || ||  || |||| ||| ||||||| ||||||||    
T  29045965 ttatgaaaacaacttatagcttatatgagaacaatttggctatttgtttatcttttgttatagaaatatcttatacacaagcacttatacgataagtg 29046062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 560 - 626
Target Start/End: Complemental strand, 45975751 - 45975683
Alignment:
Q  560 cataagctgttttcagcttattttcataca--ctccagaatagattatgaaaaccacttatagcttata 626  Q
    |||||||||||||||||||||||||||| |  |||||  |||| ||||||||||  ||| |||||||||    
T  45975751 cataagctgttttcagcttattttcataaattctccaagatagcttatgaaaacagcttgtagcttata 45975683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 695
Target Start/End: Original strand, 46504271 - 46504364
Alignment:
Q  602 ttatgaaaaccacttatagcttatatagaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||| ||||| ||||||| ||||||||| |  | ||||| | |||||| |||||||||||||| |||||| || | ||  ||||||||||||||    
T  46504271 ttatcaaaacaacttataacttatataggaataattgacctaattttatcttttgttataaaaatagtttatagacaaacacttatatgataag 46504364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 559 - 661
Target Start/End: Complemental strand, 11802596 - 11802491
Alignment:
Q  559 ccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaactttt 655  Q
    ||||||||||||||||||||||| |||||  | ||||| ||||| |||||||||| |||| |||||||| | |||| ||||||||||||||||| |||||    
T  11802596 ccataagctgttttcagcttattctcataagctctccataatagcttatgaaaacaacttgtagcttatgtgagaaaaatttgactttattttatctttt 11802497  T
Q  656 gttata 661  Q
    ||||||    
T  11802496 gttata 11802491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 562 - 671
Target Start/End: Complemental strand, 10192342 - 10192231
Alignment:
Q  562 taagctgttttcagcttattttcata-cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgtta 659  Q
    |||| |||||||| |||||||||||| | |||||| |||| || ||||||| ||||||| ||||||| | ||||||||||||||||| || |||||||||    
T  10192342 taagttgttttcaacttattttcatagctctccaggatagcttttgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgtta 10192243  T
Q  660 taaaattagttt 671  Q
    ||||| ||||||    
T  10192242 taaaaatagttt 10192231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 550 - 696
Target Start/End: Original strand, 54325036 - 54325185
Alignment:
Q  550 atgatacgtccataagctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttatt 646  Q
    |||||| ||||||||||||||||||| |||| | |||| ||||  ||  |||| || ||||||   |||||||||||||| | |||| ||||||||||||    
T  54325036 atgatatgtccataagctgttttcagtttatctccataaactctccatgatagcttttgaaaatagcttatagcttatatgaaaacagtttgactttatt 54325135  T
Q  647 ttaacttttgttataaaattagtttgtacataagaacttatatgataagt 696  Q
    ||| ||||||| ||| || |||||| |||| ||| |||||||||||||||    
T  54325136 ttatcttttgtaatagaaatagtttatacacaagcacttatatgataagt 54325185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 602 - 705
Target Start/End: Original strand, 45128363 - 45128467
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggtt 700  Q
    |||||||||| | ||||||||||||| |||| ||||||| || |||||| ||||||||||| || |||||| ||||||||  ||||||||||||| | ||    
T  45128363 ttatgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatagaaatagtttatacataagttcttatatgataagggctt 45128462  T
Q  701 atagc 705  Q
    |||||    
T  45128463 atagc 45128467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 530 - 660
Target Start/End: Complemental strand, 2996664 - 2996531
Alignment:
Q  530 agagcttaataaaataactaatgatacgtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat 627  Q
    ||||||||  |||| |||| |||| | ||||||||||| |||||| ||||||||||||  | |||||  |||| |||||||||| ||||||| |||||||    
T  2996664 agagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttatat 2996565  T
Q  628 -agaacaatttgactttattttaacttttgttat 660  Q
     | |||||||||||| ||||||| ||| ||||||    
T  2996564 aaaaacaatttgactgtattttatcttatgttat 2996531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 630 - 702
Target Start/End: Original strand, 51555949 - 51556021
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    |||||| ||||||||||||| |||||||||||| | ||| || |||||||| ||||||||||||| |||||||    
T  51555949 aacaatctgactttattttatcttttgttataataatagcttatacataagcacttatatgataaatggttat 51556021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 693
Target Start/End: Original strand, 8422887 - 8422982
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    ||||||| ||||||| ||||||||||||||| | ||||||  |||||||||||| ||||| |||||||| ||| || |||||||| || |||||||||    
T  8422887 atagattgtgaaaacaacttatagcttatatgaaaacaat--gactttattttatctttttttataaaaatagcttatacataagcacatatatgata 8422982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 590 - 679
Target Start/End: Complemental strand, 35958684 - 35958594
Alignment:
Q  590 ctccagaatagattatgaaaaccacttatagcttatatagaacaa-tttgactttattttaacttttgttataaaattagtttgtacataa 679  Q
    |||||| |||| ||||||||||  ||| ||||||||||| ||||| ||||||||||||||||||| ||||||| || ||| || |||||||    
T  35958684 ctccaggatagcttatgaaaacagcttctagcttatataaaacaaatttgactttattttaacttatgttatagaaatagcttatacataa 35958594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 540 - 649
Target Start/End: Original strand, 20936218 - 20936330
Alignment:
Q  540 aaaataactaatgatacgtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatt 636  Q
    |||| |||| |||||| || ||||||||||||||| ||||||| ||||  | |||||| ||||| ||||||||| || ||||| |||||| | |||||||    
T  20936218 aaaacaacttatgatatgttcataagctgttttcaccttatttccataatctctccaggatagaatatgaaaacaacctatagattatataaaaacaatt 20936317  T
Q  637 tgactttatttta 649  Q
    |||||| ||||||    
T  20936318 tgacttcatttta 20936330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 614 - 694
Target Start/End: Complemental strand, 41606191 - 41606110
Alignment:
Q  614 cttatagcttatata-gaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||||||||||| |||| |||||||||||||||| | |||||||| ||| |||||| |||||||  |||| ||||||||    
T  41606191 cttatagcttatataagaaccatttgactttattttatcctttgttatcaaaatagtttttacataaacacttgtatgataa 41606110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 562 - 697
Target Start/End: Original strand, 30207582 - 30207719
Alignment:
Q  562 taagctgttttcagcttattttcatacactccagaa--tagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgtt 658  Q
    ||||||||||||||||||||| ||||  |||   ||  ||| |||||||||| ||||||||||||||| | |||| ||||| |||||||||  |||||||    
T  30207582 taagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaacttatagcttatatgaaaacagtttga-tttattttattttttgtt 30207680  T
Q  659 ataaaattagtttgtacataagaacttatatgataagtg 697  Q
    ||| || ||   | |||||||| ||||||||||||||||    
T  30207681 atagaactaacatatacataagcacttatatgataagtg 30207719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 558 - 661
Target Start/End: Complemental strand, 49219202 - 49219096
Alignment:
Q  558 tccataagctgttttcagcttattttcatacactccagaa--tagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttt 654  Q
    |||||||| |||||||||||||||| ||||  |||   ||  ||| |||||||||| ||||||||||||||| | || |||||||||||||||||  |||    
T  49219202 tccataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattt 49219103  T
Q  655 tgttata 661  Q
    |||||||    
T  49219102 tgttata 49219096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 641 - 695
Target Start/End: Original strand, 32066502 - 32066556
Alignment:
Q  641 tttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||||| |||||||||||||| |||||| |||||||| ||||||| ||||||    
T  32066502 tttattttatcttttgttataaaagtagtttatacataagcacttatacgataag 32066556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 621 - 691
Target Start/End: Complemental strand, 41088380 - 41088311
Alignment:
Q  621 cttatatagaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatga 691  Q
    |||||||| |||||||| ||||||||||| |||||||| | ||| |||||| |||||||| ||||||||||    
T  41088380 cttatata-aacaattttactttattttatcttttgttgtgaaaatagtttatacataagcacttatatga 41088311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 602 - 695
Target Start/End: Complemental strand, 46797035 - 46796941
Alignment:
Q  602 ttatgaaaaccacttatagcttatatagaacaat-ttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||| ||||||| ||||||| |||  || |||| ||||||||| | |||||||| ||| ||| || | |||||||||||||||||||||    
T  46797035 ttatgaaaacaacttataacttatatggaaacatattgaatttattttatcgtttgttatgaaaatagcttatgcataagaacttatatgataag 46796941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 560 - 661
Target Start/End: Complemental strand, 17884129 - 17884025
Alignment:
Q  560 cataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatatagaa-caatttgactttattttaacttttg 656  Q
    |||||| ||||||||||| |||||||||  | |||||  |||| |||||||||| ||| ||| |||||| | || |||||| ||||||||||| ||||||    
T  17884129 cataagttgttttcagctaattttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatcttttg 17884030  T
Q  657 ttata 661  Q
    |||||    
T  17884029 ttata 17884025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 605 - 693
Target Start/End: Complemental strand, 18630694 - 18630605
Alignment:
Q  605 tgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    ||||||| ||||||||||||||| | ||| | |||||||||||||| ||||||||||  || |||||| | ||||||  |||||||||||    
T  18630694 tgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttattgaaatagtttatgcataagcgcttatatgata 18630605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 562 - 694
Target Start/End: Complemental strand, 14011293 - 14011158
Alignment:
Q  562 taagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatatagaac-aatttgactttattttaacttttgtt 658  Q
    ||||||||||||||||||||| ||||  | |||||  |||| ||||| ||||   || ||||||||||| ||| |||||  |||||||||| ||||||||    
T  14011293 taagctgttttcagcttatttccataagctctccaagatagcttatgtaaacattttgtagcttatatataaccaatttacctttattttatcttttgtt 14011194  T
Q  659 ataaaattagtttgtacataagaacttatatgataa 694  Q
    |||||| ||| || |||| ||  | |||||||||||    
T  14011193 ataaaactagcttatacacaatcatttatatgataa 14011158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 567 - 695
Target Start/End: Complemental strand, 24929547 - 24929416
Alignment:
Q  567 tgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaa 663  Q
    |||||||||||||||| ||||  | ||| || | || |||||||||| ||||||||||| ||| | |||| || |||||||||||| ||||||||||| |    
T  24929547 tgttttcagcttatttccataagctctctagtagagtttatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttataga 24929448  T
Q  664 attagtttgtacataagaacttatatgataag 695  Q
    | |||||  |||| ||  | ||||||||||||    
T  24929447 aatagttcatacaaaaacaattatatgataag 24929416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 615 - 694
Target Start/End: Complemental strand, 30024704 - 30024624
Alignment:
Q  615 ttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||||||||| | |||||||| ||||||||||| ||||||||||| || ||  || | |||||| |||||||||||||    
T  30024704 ttatagcttatatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataa 30024624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 592
Target Start/End: Original strand, 6978952 - 6979003
Alignment:
Q  541 aaataactaatgatacgtccataagctgttttcagcttattttcatacactc 592  Q
    |||||||| |||| | ||| ||||||||||||||||||||||||||| ||||    
T  6978952 aaataacttatgacatgtctataagctgttttcagcttattttcataaactc 6979003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 627
Target Start/End: Complemental strand, 9841129 - 9841058
Alignment:
Q  557 gtccataagctgtttt-cagcttattttcatacactccagaatagattatgaaaaccacttatagcttatat 627  Q
    |||||||||||||||| ||||||||||||| |   ||||| |||| ||||||||||  ||||||||||||||    
T  9841129 gtccataagctgtttttcagcttattttcacaagttccaggatagcttatgaaaacatcttatagcttatat 9841058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 694
Target Start/End: Complemental strand, 36734876 - 36734817
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||||||||||| ||||||||||| ||  || || |||||||| |||||||||||||    
T  36734876 tttgactttattttaccttttgttatagaaagagattatacataagcacttatatgataa 36734817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 664
Target Start/End: Original strand, 55870394 - 55870457
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaa 664  Q
    |||||||||| ||||||||||||| | | |||| ||||||||||||| | ||||||||||||||    
T  55870394 ttatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgttataaaa 55870457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 613 - 670
Target Start/End: Complemental strand, 4071888 - 4071830
Alignment:
Q  613 acttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtt 670  Q
    ||||||||||||||| | || ||||||||||||||||| ||||||||||| || |||||    
T  4071888 acttatagcttatatgaaaataatttgactttattttatcttttgttatagaaatagtt 4071830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 640 - 694
Target Start/End: Complemental strand, 4471149 - 4471095
Alignment:
Q  640 ctttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||||||||| |||||||||||||| |||||| | |||||| |||||||| ||||    
T  4471149 ctttattttatcttttgttataaaaatagtttatgcataagcacttatataataa 4471095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 461 - 495
Target Start/End: Original strand, 29126178 - 29126212
Alignment:
Q  461 ggcttgttttgattggcttatttgagcttatctac 495  Q
    ||||||||| |||||||||||||||||||||||||    
T  29126178 ggcttgtttggattggcttatttgagcttatctac 29126212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 630 - 694
Target Start/End: Complemental strand, 4191728 - 4191663
Alignment:
Q  630 aacaatttgactttattttaa-cttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||| |||||||||||||| | ||||||||||| || ||| || |||||||| |||||||||||||    
T  4191728 aacagtttgactttatttttatcttttgttatagaaatagcttatacataagcacttatatgataa 4191663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 627
Target Start/End: Complemental strand, 8469012 - 8468940
Alignment:
Q  557 gtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat 627  Q
    ||||||||| ||||||||| |||||||||||  | ||| ||||||  |||||||||| ||| |||||||||||    
T  8469012 gtccataagttgttttcagattattttcataagctctctagaataacttatgaaaacaactaatagcttatat 8468940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 541 - 582
Target Start/End: Original strand, 22684511 - 22684552
Alignment:
Q  541 aaataactaatgatacgtccataagctgttttcagcttattt 582  Q
    ||||| || |||||| ||||||||||||||||||||||||||    
T  22684511 aaatagcttatgatatgtccataagctgttttcagcttattt 22684552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 22684598 - 22684663
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||||||||| | ||||||||| || ||| || |||| ||| | ||||||||||||    
T  22684598 aacaatttgactttattttaccgtttgttatagaaatagcttatacagaagcatttatatgataag 22684663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 693
Target Start/End: Original strand, 32920453 - 32920543
Alignment:
Q  602 ttatgaaaaccacttatagcttata-tagaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    |||||||||| ||||||||||| || || ||| ||||||||||||||||  | ||||||||||| ||| || | |||||  ||||||||||||    
T  32920453 ttatgaaaacaacttatagcttctattaaaacgatttgactttatttta--tcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 702
Target Start/End: Complemental strand, 44319950 - 44319866
Alignment:
Q  618 tagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    |||||||||| | |||| || |||||||||||| ||||| ||||| || |||||| ||||| || |||||||||||||||| ||||    
T  44319950 tagcttatatgaaaacagttcgactttattttatctttt-ttatagaaatagtttatacatgagcacttatatgataagtgcttat 44319866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 635 - 696
Target Start/End: Complemental strand, 47970301 - 47970240
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagt 696  Q
    |||||||| |||||| ||||||||||| || ||| || |||||||| |||||||||| ||||    
T  47970301 tttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 630 - 695
Target Start/End: Complemental strand, 14482190 - 14482125
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||||||||| ||||||||||| || |||||| |||||||| ||||||||||||||    
T  14482190 aacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataag 14482125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 597 - 693
Target Start/End: Complemental strand, 34770914 - 34770817
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    |||| |||||||||| |||||||||||| || | |||||||||||||||||||| ||||||| ||  || |||||| |||||||| ||||| ||||||    
T  34770914 atagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttgtaatggaaatagtttttacataagcacttacatgata 34770817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 505 - 582
Target Start/End: Complemental strand, 14949982 - 14949905
Alignment:
Q  505 ataaacacttgttagacttcttagaagagcttaataaaataactaatgatacgtccataagctgttttcagcttattt 582  Q
    ||||||| |||| |||||  |||| ||||||||  ||||||||| |||| | ||||||||||||||||||||||||||    
T  14949982 ataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttattt 14949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 550 - 695
Target Start/End: Original strand, 28769338 - 28769486
Alignment:
Q  550 atgatacgtccataagctgttttcagcttattttcat--acactccagaatagattatgaaaaccacttatagcttat-atagaacaatttgactttatt 646  Q
    |||||| ||||||||| |||||||||||||||| |||  || ||||| ||||| ||||||||||  |||||||||||| | | || | |||||||| |||    
T  28769338 atgatatgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttgacttaatt 28769437  T
Q  647 ttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||   |||||||||  | ||| || |||||||| | ||||||||||||    
T  28769438 ttatagtttgttataggaatagcttatacataagcatttatatgataag 28769486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 597 - 661
Target Start/End: Complemental strand, 10437906 - 10437842
Alignment:
Q  597 atagattatgaaaaccacttatagcttatatagaacaatttgactttattttaacttttgttata 661  Q
    |||| |||||||| | ||||| |||||||||| |||| ||||||||||||||| |||||||||||    
T  10437906 atagcttatgaaacctacttaaagcttatataaaacagtttgactttattttatcttttgttata 10437842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 560 - 660
Target Start/End: Complemental strand, 31862554 - 31862451
Alignment:
Q  560 cataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttata-tagaacaatttgactttattttaacttttg 656  Q
    ||||||||||||||||||||||||||||  | ||| || |||  ||||||||||  |||||||||||||  |||| | ||||||||||| ||| ||||||    
T  31862554 cataagctgttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttatacgagaatagtttgactttatattatcttttg 31862455  T
Q  657 ttat 660  Q
    ||||    
T  31862454 ttat 31862451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 602 - 688
Target Start/End: Complemental strand, 42597418 - 42597331
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttata 688  Q
    |||||||||| |||||||||||  || | |||||||| ||||||||||| ||||||||||| || ||| || |||||||| |||||||    
T  42597418 ttatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagcttatacataagtacttata 42597331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 614 - 694
Target Start/End: Complemental strand, 7026736 - 7026655
Alignment:
Q  614 cttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||||| ||||||| | |||||||| ||||||||||| |||||||||||| | ||| || | |||||| |||||||||||||    
T  7026736 cttataccttatatgaaaacaattttactttattttatcttttgttataacagtagcttatgcataagcacttatatgataa 7026655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 557 - 654
Target Start/End: Complemental strand, 12361256 - 12361156
Alignment:
Q  557 gtccataagctgttttcagcttattttcat--acactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaactt 653  Q
    |||||||||||||||||| ||||||| |||   | |||| |||||  ||||||||||  |||||||||||||| | ||||||||||||| |||||| |||    
T  12361256 gtccataagctgttttcaacttatttccattagctctcctgaataacttatgaaaacagcttatagcttatatgaaaacaatttgacttcattttatctt 12361157  T
Q  654 t 654  Q
    |    
T  12361156 t 12361156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 597 - 697
Target Start/End: Complemental strand, 30013240 - 30013140
Alignment:
Q  597 atagattatgaaaaccacttatagcttatatagaa-caatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||| ||||||||||  |||||||||||||| ||| || |||||||| |||| | |||||||||||||| ||| ||  ||||||| |||||||| |||||    
T  30013240 atagcttatgaaaacagcttatagcttatatggaaacagtttgacttaatttgaccttttgttataaaa-tagcttaaacataagcacttatataataag 30013142  T
Q  696 tg 697  Q
    ||    
T  30013141 tg 30013140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 590 - 649
Target Start/End: Original strand, 6509344 - 6509404
Alignment:
Q  590 ctccagaatagattatgaaaaccacttatagcttatataga-acaatttgactttatttta 649  Q
    |||||| |||| ||||||||||  ||||||||||||||| | |||||||||||||||||||    
T  6509344 ctccaggatagcttatgaaaacagcttatagcttatataaatacaatttgactttatttta 6509404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 530 - 658
Target Start/End: Complemental strand, 11183636 - 11183505
Alignment:
Q  530 agagcttaataaaataactaatgatacgtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat 627  Q
    ||||||||  |||| |||| |||||| ||| |||||||||||||||||||||| ||||  | ||||||  ||| || |||||||  ||||||||| ||||    
T  11183636 agagcttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttatagctaatat 11183537  T
Q  628 -agaacaatttgactttattttaacttttgtt 658  Q
     || ||| ||||||||| ||||| || |||||    
T  11183536 gaggacagtttgactttgttttatctgttgtt 11183505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 630 - 694
Target Start/End: Complemental strand, 29699242 - 29699178
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||| ||||||||||||||| ||||||||||| || ||  ||||||||||| | |||||||||||    
T  29699242 aacattttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataa 29699178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 630 - 694
Target Start/End: Original strand, 35534943 - 35535007
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||| ||||||||||||||||||||| ||||| || ||| || || ||||| |||||||||||||    
T  35534943 aacagtttgactttattttaacttttattatagaaatagcttatatataagcacttatatgataa 35535007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 635 - 695
Target Start/End: Original strand, 39392748 - 39392808
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||||||||||| ||||||||||| || |||||| ||||||   ||||||||||||||    
T  39392748 tttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataag 39392808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 694
Target Start/End: Complemental strand, 14949871 - 14949812
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||| ||||||| ||||||||||| || ||| || ||||||||||||| ||||||||    
T  14949871 tttgactctattttatcttttgttatagaagtagcttatacataagaacttgtatgataa 14949812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 635 - 689
Target Start/End: Complemental strand, 26370971 - 26370917
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatat 689  Q
    ||||||||||||||| |||||||| ||||| ||| |||| |||||| ||||||||    
T  26370971 tttgactttattttatcttttgttgtaaaaatagcttgtgcataagtacttatat 26370917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 615 - 664
Target Start/End: Original strand, 42237488 - 42237538
Alignment:
Q  615 ttatagcttatat-agaacaatttgactttattttaacttttgttataaaa 664  Q
    ||||||||||||| | |||||||| ||||||||||| ||||||||||||||    
T  42237488 ttatagcttatatgaaaacaatttaactttattttatcttttgttataaaa 42237538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 462 - 496
Target Start/End: Complemental strand, 44792810 - 44792776
Alignment:
Q  462 gcttgttttgattggcttatttgagcttatctact 496  Q
    |||||||| ||||||||||||||||||||||||||    
T  44792810 gcttgtttggattggcttatttgagcttatctact 44792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 615 - 695
Target Start/End: Original strand, 34788493 - 34788574
Alignment:
Q  615 ttatagcttatatagaa-caatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||||||||| ||| || ||||||||||||||| |||| || |||||| ||| || ||| |||| | ||||||||||||    
T  34788493 ttatagcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 552 - 661
Target Start/End: Complemental strand, 4006783 - 4006671
Alignment:
Q  552 gatacgtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatatagaa-caatttgactttatttt 648  Q
    |||| ||||||||| | |||||||||||||||||||  | |||  | |||| |||||||||| |||||||||||||||| || |||||||||||||||||    
T  4006783 gatatgtccataagttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatataaaaacaatttgactttatttt 4006684  T
Q  649 aacttttgttata 661  Q
    | | |||||||||    
T  4006683 atcatttgttata 4006671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 702
Target Start/End: Complemental strand, 7714013 - 7713941
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    |||||||||||||||||||| |||||||||| ||| |||||| ||||||||  ||||||||||| ||||||||    
T  7714013 aacaatttgactttattttatcttttgttatgaaagtagtttatacataagctcttatatgataggtggttat 7713941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 530 - 702
Target Start/End: Original strand, 1810284 - 1810454
Alignment:
Q  530 agagcttaataaaataactaatgatacgtccataagctgttttcagcttattttcatacactccagaatagattatgaaaaccacttatagcttatat-a 628  Q
    |||||||| ||||| ||||||||  | |||||||||||| ||||||||||||| |||    ||||||||||  | | |||||  |||||||||||||| |    
T  1810284 agagcttattaaaacaactaatggcatgtccataagctgctttcagcttatttccatgatatccagaatagtgtgttaaaacagcttatagcttatatga 1810383  T
Q  629 gaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
     ||||||   | ||||||||| ||||||||||| || ||| || | |||||| |||||||||||| ||| ||||    
T  1810384 aaacaat---attttattttatcttttgttatagaaatagcttttgcataagcacttatatgataggtgcttat 1810454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 22742371 - 22742289
Alignment:
Q  614 cttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||| | |||||||||||||||||||| | ||||||||| || ||| || || ||||||||||||| ||||||    
T  22742371 cttatagcttatatgaaaacaatttgactttattttatcctttgttatacaaatagcttatagataagaacttatacgataag 22742289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 622 - 695
Target Start/End: Complemental strand, 29269892 - 29269819
Alignment:
Q  622 ttatatagaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||| |||||||||||||||||||| ||| ||||||| || |||||| |||| ||| | ||||||||||||    
T  29269892 ttatataaaacaatttgactttattttatcttctgttatagaaatagtttatacacaagcatttatatgataag 29269819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 564 - 694
Target Start/End: Original strand, 33911295 - 33911427
Alignment:
Q  564 agctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttatatagaacaatttgactttattttaacttttgttata 661  Q
    |||||||||||||||||||||| | |||   ||| |||| ||||||||||  ||||||  |||||| || || ||| ||||||||| | |||||||||||    
T  33911295 agctgttttcagcttattttcacaaacttttcaggatagtttatgaaaacagcttataaattatatggatcagtttaactttatttgatcttttgttata 33911394  T
Q  662 aaattagtttgtacataagaacttatatgataa 694  Q
    ||| ||| || |||||||  |||||||| ||||    
T  33911395 aaaatagattatacataaacacttatattataa 33911427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 630 - 702
Target Start/End: Original strand, 8349746 - 8349818
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    |||||||| ||||||||||| ||||||||| | || |||||| |||| ||  |||||||||||||||||||||    
T  8349746 aacaatttaactttattttatcttttgttagagaaatagtttatacacaaacacttatatgataagtggttat 8349818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 597 - 695
Target Start/End: Original strand, 2727904 - 2728003
Alignment:
Q  597 atagattatgaaaaccacttatagcttatataga-acaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||| |||||||||| |||||||||||||||  | ||||||||| |||  |||| ||||||||||| ||  || || |||||||| ||||||||||||||    
T  2727904 atagcttatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttatagaagcagcttatacataagcacttatatgataag 2728003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 636 - 695
Target Start/End: Complemental strand, 13360717 - 13360658
Alignment:
Q  636 ttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||||||||||  |||||||||| || ||||||| ||||||| ||||||||||||||    
T  13360717 ttgactttattttatattttgttatagaaatagtttgcacataagcacttatatgataag 13360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 567 - 694
Target Start/End: Original strand, 32386579 - 32386709
Alignment:
Q  567 tgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaa 663  Q
    |||||||||||||||||||||  | |||||| |||  | |||||||| || |||| ||||||| | ||||||||||| |||||||| ||||| |||   |    
T  32386579 tgttttcagcttattttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaaacaatttgaccttattttatcttttcttagtga 32386678  T
Q  664 attagtttgtacataagaacttatatgataa 694  Q
    | |||| | |||||||| |||||||||||||    
T  32386679 aatagtctatacataagcacttatatgataa 32386709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 602 - 695
Target Start/End: Original strand, 29274282 - 29274376
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||||||   ||||||||||||| | |||||||||||||||||||| |||||| |||| || ||| || |||||||| | || |||||||||    
T  29274282 ttatgaaaacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 566 - 702
Target Start/End: Complemental strand, 1498036 - 1497896
Alignment:
Q  566 ctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaactttt-gttata 661  Q
    ||||||||| ||||||||||||  | |||||  |||| ||||||||||  |||||| || |||| | |||| ||||||||||||||| ||||| |||| |    
T  1498036 ctgttttcaccttattttcataagctctccaagatagtttatgaaaacttcttataactcatatgaaaacagtttgactttattttaccttttggttaaa 1497937  T
Q  662 aaattagtttgtacataagaacttatatgataagtggttat 702  Q
    ||| ||| ||  ||||||| ||||| |||||||||| ||||    
T  1497936 aaaatagcttaaacataagcacttaaatgataagtgtttat 1497896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 561 - 661
Target Start/End: Original strand, 281858 - 281961
Alignment:
Q  561 ataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgt 657  Q
    ||||| |||||||||||||||| |||   | ||| || |||| ||||||| ||  |||||||||||||| | ||||| |||||||||||||| |||||||    
T  281858 ataagttgttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaagttgactttattttatcttttgt 281957  T
Q  658 tata 661  Q
    ||||    
T  281958 tata 281961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 597 - 655
Target Start/End: Complemental strand, 2112222 - 2112164
Alignment:
Q  597 atagattatgaaaaccacttatagcttatatagaacaatttgactttattttaactttt 655  Q
    |||| |||||||||| |||||||| ||||||  |||||||| ||||||||||| |||||    
T  2112222 atagtttatgaaaacaacttatagtttatatgaaacaatttaactttattttatctttt 2112164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 602 - 695
Target Start/End: Complemental strand, 2514719 - 2514625
Alignment:
Q  602 ttatgaaaaccacttatagcttatatagaacaa-tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||  |||||||||| ||||| ||  | ||||||||||||||| ||||| ||||| || ||| || |||||||| ||||| ||||||||    
T  2514719 ttatgaaaataacttatagctcatataaaattagtttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataag 2514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 561 - 657
Target Start/End: Complemental strand, 3155235 - 3155137
Alignment:
Q  561 ataagctgttttcagcttattttcata-cactccagaatagattatgaaaaccacttatagcttatatag-aacaatttgactttattttaacttttgt 657  Q
    |||||||||||||||||||||| |||| | |||||| |||  |||||||||   ||||||| |||||| | |||| ||||||||| ||||| |||||||    
T  3155235 ataagctgttttcagcttatttccatagctctccaggatatcttatgaaaatagcttataggttatatggaaacagtttgactttgttttatcttttgt 3155137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 496
Target Start/End: Complemental strand, 4163311 - 4163273
Alignment:
Q  458 ataggcttgttttgattggcttatttgagcttatctact 496  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  4163311 ataggcatgtttggattggcttatttgagcttatctact 4163273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 496
Target Start/End: Complemental strand, 4224932 - 4224894
Alignment:
Q  458 ataggcttgttttgattggcttatttgagcttatctact 496  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  4224932 ataggcatgtttggattggcttatttgagcttatctact 4224894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 541 - 587
Target Start/End: Complemental strand, 9027658 - 9027612
Alignment:
Q  541 aaataactaatgatacgtccataagctgttttcagcttattttcata 587  Q
    |||||||| |||| | ||||||||| |||||||||||||||||||||    
T  9027658 aaataacttatgacatgtccataagttgttttcagcttattttcata 9027612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 630 - 696
Target Start/End: Complemental strand, 34405093 - 34405027
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagt 696  Q
    |||||||||||||||||||||||||| ||||| || ||| || || ||||  |||||||| ||||||    
T  34405093 aacaatttgactttattttaacttttattatagaaatagcttatagataaacacttatatcataagt 34405027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 694
Target Start/End: Original strand, 3217275 - 3217336
Alignment:
Q  633 aatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||||||||||||| ||| | ||| |||| ||| || |||||||| |||||||||||||    
T  3217275 aatttgactttattttatcttctcttacaaaaatagcttatacataagcacttatatgataa 3217336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 627
Target Start/End: Complemental strand, 4246474 - 4246402
Alignment:
Q  557 gtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat 627  Q
    |||||||||||||||||| |||||||| |||  | ||||| ||||| ||||||||||  ||||||| ||||||    
T  4246474 gtccataagctgttttcaacttatttttatatgctctccataatagcttatgaaaacagcttatagattatat 4246402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 630 - 695
Target Start/End: Complemental strand, 24774746 - 24774681
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||| |||||||||||||||  |||||||||| || |||||| || ||||| ||||| ||||||||    
T  24774746 aacagtttgactttattttatattttgttatagaaatagtttatatataagcacttacatgataag 24774681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 615 - 664
Target Start/End: Complemental strand, 27857378 - 27857329
Alignment:
Q  615 ttatagcttatatagaacaatttgactttattttaacttttgttataaaa 664  Q
    |||||||||||||  |||| ||||||||||||||| ||||||||| ||||    
T  27857378 ttatagcttatattaaacagtttgactttattttatcttttgttacaaaa 27857329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 550 - 587
Target Start/End: Complemental strand, 27894117 - 27894080
Alignment:
Q  550 atgatacgtccataagctgttttcagcttattttcata 587  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  27894117 atgatatgtccataaactgttttcagcttattttcata 27894080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 560 - 694
Target Start/End: Complemental strand, 1816644 - 1816506
Alignment:
Q  560 cataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatatagaa-caatttgactttattttaacttttg 656  Q
    |||| ||||||||||||||||||| |||  | |||||| |||| |||||||||| ||||||| |||||| | || || ||||||||||||||| |||||     
T  1816644 cataggctgttttcagcttattttgataagctctccagtatagcttatgaaaacaacttatatcttatacaaaaacagtttgactttattttatctttta 1816545  T
Q  657 ttat-aaaattagtttgtacataagaacttatatgataa 694  Q
    |||| |||| |||||| ||||| ||  ||||||||||||    
T  1816544 ttataaaaaatagtttatacattagctcttatatgataa 1816506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 616 - 697
Target Start/End: Complemental strand, 39971320 - 39971240
Alignment:
Q  616 tatagcttatatagaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtg 697  Q
    |||||||||| || ||||||||| |||||||||| ||||||||||| || ||  || |||||||| ||||||||||||||||    
T  39971320 tatagcttat-taaaacaatttggctttattttatcttttgttatataagtaacttatacataagcacttatatgataagtg 39971240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 641 - 695
Target Start/End: Complemental strand, 25964419 - 25964365
Alignment:
Q  641 tttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||||| |||||||||||||| ||| || |||| ||||||||||||||||||    
T  25964419 tttattttatcttttgttataaaaatagcttatacaaaagaacttatatgataag 25964365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 565 - 627
Target Start/End: Original strand, 14548735 - 14548799
Alignment:
Q  565 gctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat 627  Q
    |||||||||||||||||| ||||  | ||||||||||  |||||||||| |||||||||||||||    
T  14548735 gctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatat 14548799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 633 - 694
Target Start/End: Original strand, 16790441 - 16790502
Alignment:
Q  633 aatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||| ||||||||| || ||||||||||| ||| || |||||||| |||||||||||||    
T  16790441 aatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataa 16790502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 44374726 - 44374791
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||||||||| ||||||||| | |  ||| || |||||||| ||||||||||||||    
T  44374726 aacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataag 44374791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 604 - 664
Target Start/End: Complemental strand, 48397661 - 48397600
Alignment:
Q  604 atgaaaaccacttatagcttatatagaa-caatttgactttattttaacttttgttataaaa 664  Q
    |||||||| |||||||||||| ||| || |||||||||||||||||| ||||| ||||||||    
T  48397661 atgaaaacaacttatagcttaaataaaaacaatttgactttattttatcttttattataaaa 48397600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 697
Target Start/End: Original strand, 22214735 - 22214830
Alignment:
Q  603 tatgaaaaccacttatagcttatataga-acaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtg 697  Q
    ||||||||| |||||||| ||||||  | ||||||| ||||||||||| | ||||||||| || || ||| |||||| | ||||||| ||||||||    
T  22214735 tatgaaaacaacttataggttatatgaatacaatttcactttattttatcctttgttatagaaataatttatacatacgcacttatacgataagtg 22214830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 697
Target Start/End: Original strand, 23530237 - 23530335
Alignment:
Q  602 ttatgaaaaccacttatagcttatat--agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaac-ttatatgataagtg 697  Q
    |||||||||| |||||||  ||||||  | || ||||||||||||||||| ||||||||| |||| ||| || ||| |||| || ||||||||||||||    
T  23530237 ttatgaaaacaacttatactttatatgaaaaataatttgactttattttatcttttgttagaaaactagcttctacgtaagcactttatatgataagtg 23530335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 690
Target Start/End: Complemental strand, 23793571 - 23793517
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatg 690  Q
    ||||||||||||||| |||||||||||||| |||||| |||||||| | |||||||    
T  23793571 tttgactttattttatcttttgttataaaa-tagtttatacataagcaattatatg 23793517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 694
Target Start/End: Original strand, 24268242 - 24268301
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||||||| ||||||||||||| |||| || |||||| |||||||| |||| ||||||||    
T  24268242 tttgacttgattttaacttttgctatagaaatagtttatacataagcacttgtatgataa 24268301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 702
Target Start/End: Complemental strand, 38462343 - 38462197
Alignment:
Q  559 ccataagctgttttcagcttattttcatacact--ccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaactttt 655  Q
    ||||||| |||||||||||||||| ||||  ||  |  | |||| ||||||||||   ||||||| ||||| | |||| ||||||||||||||| |||||    
T  38462343 ccataagttgttttcagcttatttccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttgactttattttatctttt 38462244  T
Q  656 gttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    | |||| || ||| || || ||||  |||||||||||||||| ||||    
T  38462243 ggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 695
Target Start/End: Original strand, 41028939 - 41028998
Alignment:
Q  636 ttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||  ||||||||||| || ||| || |||||||| ||||||||||||||    
T  41028939 ttgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataag 41028998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 540 - 582
Target Start/End: Original strand, 1823901 - 1823943
Alignment:
Q  540 aaaataactaatgatacgtccataagctgttttcagcttattt 582  Q
    |||||||||||||||| ||||||||| |||||| |||||||||    
T  1823901 aaaataactaatgatatgtccataagttgtttttagcttattt 1823943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 596 - 665
Target Start/End: Complemental strand, 37788883 - 37788813
Alignment:
Q  596 aatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaat 665  Q
    ||||| |||||||||| |||||||| |||||  | || |||| |||||||||||| |||||||||||||||    
T  37788883 aatagcttatgaaaacaacttatagattatacgaaaataattggactttattttatcttttgttataaaat 37788813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 596 - 692
Target Start/End: Complemental strand, 47217380 - 47217283
Alignment:
Q  596 aatagattatgaaaaccacttatagcttatataga-acaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgat 692  Q
    ||||| |||||||||| ||||||||||||| || | ||||||| || ||||||||  |||||||| | || ||| || || ||||| |||||||||||    
T  47217380 aataggttatgaaaacaacttatagcttatgtaaagacaatttcacattattttatgttttgttagagaaatagcttatagataagtacttatatgat 47217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 561 - 695
Target Start/End: Complemental strand, 27636 - 27499
Alignment:
Q  561 ataagctgttttcagcttattttcatacact--ccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgt 657  Q
    ||||| |||||||||||||||| || || ||  |||  |||| |||||||||| |||||||| |||||| | |||||||||||||||||||| ||| |||    
T  27636 ataagttgttttcagcttatttccacacgcttaccaagatagtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgt 27537  T
Q  658 tataaaattagtttgtacataagaacttatatgataag 695  Q
    |||| || ||  || |||||||| ||||| ||||||||    
T  27536 tatagaaataacttatacataagcacttacatgataag 27499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 602 - 679
Target Start/End: Complemental strand, 1417281 - 1417203
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataa 679  Q
    |||||||||| |||||| |||||||| | |||||||||||||||||||| ||||||||||| || |||||| |||||||    
T  1417281 ttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaatagtttatacataa 1417203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 557 - 661
Target Start/End: Original strand, 48157126 - 48157233
Alignment:
Q  557 gtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttata-tagaacaatttgactttattttaactt 653  Q
    |||||||||||||||||||||||||| ||||    |||| |||||| || ||||||| | |||||||||||| || |||||||| ||||||||||| |||    
T  48157126 gtccataagctgttttcagcttatttccataagatctcccgaatagcttgtgaaaacaaattatagcttatattaaaacaatttcactttattttatctt 48157225  T
Q  654 ttgttata 661  Q
    || |||||    
T  48157226 ttattata 48157233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 635 - 693
Target Start/End: Complemental strand, 27492778 - 27492720
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    ||||| ||||||| ||||||||||||| || |||||| |||||||||||||||||||||    
T  27492778 tttgattttatttgaacttttgttatagaaatagtttatacataagaacttatatgata 27492720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 658
Target Start/End: Original strand, 30456498 - 30456560
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgtt 658  Q
    |||| |||||||||||||||||| ||||||| | |||||||||||||||||||| ||||||||    
T  30456498 atagtttatgaaaaccacttataacttatatgaaaacaatttgactttattttatcttttgtt 30456560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 603 - 695
Target Start/End: Complemental strand, 49060556 - 49060463
Alignment:
Q  603 tatgaaaaccacttatagcttatatagaac-aatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||||||  |||||||||||||||| ||  |||||||||||||||||  |||||||||| || ||| || |||||||  ||||||||||||||    
T  49060556 tatgaaaataacttatagcttatataaaaataatttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataag 49060463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 560 - 664
Target Start/End: Complemental strand, 38010775 - 38010668
Alignment:
Q  560 cataagctgttttcagcttattttcataca--ctccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttg 656  Q
    ||||||||||||| ||||||||| ||||    ||| || |||||||||||||||  |||||||||||||| | ||||||||| |||| ||||| ||||||    
T  38010775 cataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggctttgttttatcttttg 38010676  T
Q  657 ttataaaa 664  Q
    || |||||    
T  38010675 ttttaaaa 38010668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 547 - 702
Target Start/End: Original strand, 3610736 - 3610894
Alignment:
Q  547 ctaatgatacgtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttata-tagaacaatttgacttt 643  Q
    ||||||| | ||||||||||  ||||||||||||||  |||  | ||| || |||| ||| |||||| ||||||||||||||  | |||| |||| |||     
T  3610736 ctaatgacatgtccataagcctttttcagcttatttctataagctctctaggatagtttacgaaaacaacttatagcttataccaaaacagtttgccttc 3610835  T
Q  644 attttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    |||||| |||||||| || || ||| || |||||||| |||||||||| ||||| ||||    
T  3610836 attttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 630 - 692
Target Start/End: Complemental strand, 24973932 - 24973870
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgat 692  Q
    |||||||||| ||||||||| ||||||||||| || ||| || |||||||| |||||||||||    
T  24973932 aacaatttgaatttattttatcttttgttatagaaatagcttttacataagcacttatatgat 24973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 11721308 - 11721373
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||| ||||||||||||||||| || |||||| || | ||  ||||||||||||||    
T  11721308 aacaatttgactttcttttaacttttgttatagaaatagtttataaagaaacacttatatgataag 11721373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 602 - 693
Target Start/End: Complemental strand, 30496721 - 30496629
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    |||||||||| || ||||| |||||  | ||||||||||||||||||||  |||||||||| || |||||| |||||||  |||||| |||||    
T  30496721 ttatgaaaacaacctataggttatacgaaaacaatttgactttattttatattttgttatagaaatagtttatacataaacacttatgtgata 30496629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 563 - 656
Target Start/End: Complemental strand, 39506014 - 39505919
Alignment:
Q  563 aagctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttatatagaacaatttgactttattttaacttttg 656  Q
    ||||| |||||||||||||| |||| ||||  |||||||| |||||||||| |||||  ||||||||  |||| ||||||| ||||| | ||||||    
T  39506014 aagctattttcagcttatttccataaactctccagaatagcttatgaaaacaacttaatgcttatatgaaacagtttgactctatttaatcttttg 39505919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 587
Target Start/End: Complemental strand, 44808239 - 44808192
Alignment:
Q  540 aaaataactaatgatacgtccataagctgttttcagcttattttcata 587  Q
    ||||||||| |||| | |||||||| ||||||||||||||||||||||    
T  44808239 aaaataacttatgacatgtccataacctgttttcagcttattttcata 44808192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 661
Target Start/End: Complemental strand, 46082127 - 46081990
Alignment:
Q  530 agagcttaataaaataactaatgatacgtccataagctgttttcagcttattttcata--cactccagaata--gattatgaaaaccacttatagcttat 625  Q
    ||||||||  |||| |||| |||| | | ||||||| |||||||||||||||||||||  | ||||||||||  |  ||||||||| ||||||| |||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctctccagaatagcgtctatgaaaacaacttataacttat 46082028  T
Q  626 at-agaaca-atttgactttattttaacttttgttata 661  Q
    || | ||||  ||||||||| |||||||||| ||||||    
T  46082027 atgaaaacagttttgactttgttttaactttcgttata 46081990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 587
Target Start/End: Original strand, 47134746 - 47134793
Alignment:
Q  540 aaaataactaatgatacgtccataagctgttttcagcttattttcata 587  Q
    |||| |||| |||| ||||||||||| |||||||||||||||||||||    
T  47134746 aaaacaacttatgacacgtccataagttgttttcagcttattttcata 47134793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 639 - 697
Target Start/End: Original strand, 1413169 - 1413227
Alignment:
Q  639 actttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtg 697  Q
    ||||||||||| |||||||||| ||| ||||||  ||||||| ||||||| ||||||||    
T  1413169 actttattttaccttttgttattaaaatagtttagacataagcacttatacgataagtg 1413227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 602 - 703
Target Start/End: Original strand, 9527143 - 9527245
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggtt 700  Q
    |||||||||| |||||||| |||||| | |||| |||||||||||| || ||||||||||| |  |||  | || ||||| |||| ||||||||||| ||    
T  9527143 ttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatataagcacttgtatgataagtgttt 9527242  T
Q  701 ata 703  Q
    |||    
T  9527243 ata 9527245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 602 - 671
Target Start/End: Original strand, 17989076 - 17989146
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagttt 671  Q
    |||||||||| | |||||| |||||| | |||| |||||||||||||||  ||||||||||||| ||||||    
T  17989076 ttatgaaaacaaattatagtttatatgaaaacagtttgactttattttatattttgttataaaactagttt 17989146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 614 - 695
Target Start/End: Complemental strand, 35536112 - 35536030
Alignment:
Q  614 cttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||| ||||||| | |||||||||||||||||||| ||| ||||||| || ||| || ||||||||   ||||||||||||    
T  35536112 cttataacttatatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagcctttatatgataag 35536030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 561 - 647
Target Start/End: Complemental strand, 44822019 - 44821930
Alignment:
Q  561 ataagctgttttcagcttattttcataca--ctccagaatagattatgaaaaccacttatagcttata-tagaacaatttgactttattt 647  Q
    ||||| |||||||| ||||||||||||    ||||||||||| ||||||||||  |||||| ||||||  | ||||||||||||||||||    
T  44822019 ataagttgttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataacttatacaaaaacaatttgactttattt 44821930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 611
Target Start/End: Complemental strand, 6601431 - 6601375
Alignment:
Q  557 gtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaac 611  Q
    ||||||||||| || ||||||||||||||||  ||||||||||||| |||| |||||    
T  6601431 gtccataagctattctcagcttattttcataagcactccagaatagcttataaaaac 6601375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 619
Target Start/End: Original strand, 24363607 - 24363671
Alignment:
Q  557 gtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttata 619  Q
    ||||||||| |||||||||||||||| ||||  | |||||| |||| |||||||||| |||||||    
T  24363607 gtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttata 24363671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 597 - 689
Target Start/End: Original strand, 28340892 - 28340985
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatat 689  Q
    |||| ||||||||||  |||||||||||||| | ||||||||||||| |||| | ||||| |||||||| |||  | || ||||| ||||||||    
T  28340892 atagcttatgaaaacagcttatagcttatatgacaacaatttgacttcatttcatcttttattataaaaatagcatatagataagcacttatat 28340985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 694
Target Start/End: Complemental strand, 30751502 - 30751441
Alignment:
Q  633 aatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||||||||||||||||  |||||||| |||| |||||| | || ||| |||||||||||||    
T  30751502 aatttgactttattttatattttgttacaaaaatagtttattcacaagcacttatatgataa 30751441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 641 - 694
Target Start/End: Complemental strand, 45078270 - 45078217
Alignment:
Q  641 tttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||||||| | ||||||||||||| ||| || |||||||| |||||||||||||    
T  45078270 tttatttttatttttgttataaaaatagcttatacataagcacttatatgataa 45078217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 557 - 664
Target Start/End: Original strand, 8651359 - 8651467
Alignment:
Q  557 gtccataagctgttttcagcttattttcatacactcc-agaatagattatgaaaaccacttatagcttatatagaacaatttgactttattttaactttt 655  Q
    ||||||||| |||||||||| ||||| ||||  |||| ||||||| ||||||||||   |||||||||||||  |||||||||| || |||||| |||||    
T  8651359 gtccataagttgttttcagcatatttccataagctcccagaatagcttatgaaaacagtttatagcttatatgcaacaatttgatttgattttatctttt 8651458  T
Q  656 gttataaaa 664  Q
    ||| |||||    
T  8651459 gttctaaaa 8651467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 35095865 - 35095930
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||||||||| ||||||||||| || ||||||  | ||||| ||||||||||||||    
T  35095865 aacaatttgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgataag 35095930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 37588370 - 37588438
Alignment:
Q  561 ataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat 627  Q
    |||||||||||||||||||||| ||||  | ||||||||||  |||||||||| |||||||||||||||    
T  37588370 ataagctgttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatat 37588438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 628 - 689
Target Start/End: Complemental strand, 39128629 - 39128568
Alignment:
Q  628 agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatat 689  Q
    |||||||||||||||||||||| ||||||||||| |||||| || |||||||| || |||||    
T  39128629 agaacaatttgactttattttatcttttgttatagaattagcttatacataagcacatatat 39128568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 557 - 694
Target Start/End: Complemental strand, 35960477 - 35960338
Alignment:
Q  557 gtccataagctgttttcagcttattttcatacact--ccagaatagattatgaaaaccacttatagcttatatagaacaatttgactttattttaacttt 654  Q
    ||||||||| |||||| |||||||||   ||| ||  |||| |||| |||||||| | |||||||| ||||||  || | ||||||||||||||| ||||    
T  35960477 gtccataagatgtttttagcttatttctttacgctttccaggatagcttatgaaatcaacttatagtttatatgaaatagtttgactttattttatcttt 35960378  T
Q  655 tgttataaaattagtttgtacataagaacttatatgataa 694  Q
    | ||||| || |||||| | |||||  |||||||||||||    
T  35960377 tattatagaaatagtttatgcataaatacttatatgataa 35960338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 597 - 687
Target Start/End: Complemental strand, 4855720 - 4855629
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttat 687  Q
    |||| |||||||||| ||||||| ||||||| | |||||||| |||||||||||  ||||||||||||| ||| |  |||||||| ||||||    
T  4855720 atagtttatgaaaacaacttataacttatatgataacaatttaactttattttattttttgttataaaaatagctaatacataagtacttat 4855629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 550 - 661
Target Start/End: Complemental strand, 14295577 - 14295463
Alignment:
Q  550 atgatacgtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttatt 646  Q
    |||||| ||| ||||||||||||||||||| ||  | |  | |||||| |||| ||| ||||||  |||||||||||||| | |||| ||||||||||||    
T  14295577 atgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttatagcttatatgaaaacagtttgactttatt 14295478  T
Q  647 ttaacttttgttata 661  Q
    ||| |||||||||||    
T  14295477 ttatcttttgttata 14295463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 569 - 686
Target Start/End: Original strand, 31030148 - 31030266
Alignment:
Q  569 ttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaat 665  Q
    |||||||||||||| ||||  | |||||| | || ||| |||||| ||||||||||||||| | ||||| |||||||||||| ||  ||||||||||||     
T  31030148 ttttcagcttatttccataagctctccaggacagcttaggaaaactacttatagcttatatgataacaacttgactttatttaaa--tttgttataaaaa 31030245  T
Q  666 tagtttgtacataagaactta 686  Q
    ||| || |||||||| |||||    
T  31030246 tagcttatacataagcactta 31030266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 562 - 655
Target Start/End: Original strand, 10272442 - 10272538
Alignment:
Q  562 taagctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttata-tagaacaatttgactttattttaactttt 655  Q
    |||| ||||||||||||||||||||| ||||  ||  || | |||||||||| ||||||||||||||  | ||||||||||||| |||||| |||||    
T  10272442 taagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaatttgacttaattttatctttt 10272538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 596 - 692
Target Start/End: Original strand, 18704083 - 18704179
Alignment:
Q  596 aatagattatgaaaaccacttatagcttatatagaacaat-ttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgat 692  Q
    ||||| |||||||||| |||||||||||||||| ||  |  |||||||||||| | ||||||||||| || ||  || ||||||||||||||||||||    
T  18704083 aatagcttatgaaaacaacttatagcttatataaaaatagcttgactttattt-atcttttgttatagaaataacttatacataagaacttatatgat 18704179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 606 - 694
Target Start/End: Complemental strand, 19177492 - 19177403
Alignment:
Q  606 gaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||||| ||||||||||||||| | |||| || ||||| |||||| ||| |||| || || |||||| |||||||| |||||||||||||    
T  19177492 gaaaacaacttatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcacttatatgataa 19177403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 561 - 695
Target Start/End: Original strand, 35135676 - 35135809
Alignment:
Q  561 ataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgt 657  Q
    ||||||||||||||  |||| ||||||  |||||| |||||| ||||||||    |||||||||||||| | || | ||||||||||||||| |||||||    
T  35135676 ataagctgttttcaaattatcttcataagcactccggaatagcttatgaaa----cttatagcttatatgaaaatagtttgactttattttatcttttgt 35135771  T
Q  658 tataaaattagtttgtacataagaacttatatgataag 695  Q
    |||| || ||  || |||||||  ||||||||| ||||    
T  35135772 tatagaaatatcttatacataaacacttatatgttaag 35135809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 37526209 - 37526277
Alignment:
Q  561 ataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat 627  Q
    |||||||||||||||||||||| ||||  | |||||||| |  |||||||||| |||||||||||||||    
T  37526209 ataagctgttttcagcttatttccataagctctccagaacaacttatgaaaacaacttatagcttatat 37526277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 547 - 628
Target Start/End: Original strand, 2880543 - 2880626
Alignment:
Q  547 ctaatgatacgtccataagctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttatata 628  Q
    ||||||||| || |||||| |||||||||||||||| |||| ||||  | |||||| |||| ||||| |||||||| |||||||    
T  2880543 ctaatgatatgttcataaggtgttttcagcttatttccataaactcttctgaatagcttataaaaacaacttatagattatata 2880626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 563 - 680
Target Start/End: Complemental strand, 6593357 - 6593238
Alignment:
Q  563 aagctgttttcagcttattttcatacactccagaa--tagattatgaaaaccacttatagcttatatagaacaatttgactttattttaacttttgttat 660  Q
    ||||| |||||||||||||||||||  |||   ||  ||| |||| |||||  |||||||| |||| |||| ||||| ||||||||||| ||||||||||    
T  6593357 aagctcttttcagcttattttcataagctctctaaggtagcttatcaaaacagcttatagcctatacagaataatttaactttattttatcttttgttat 6593258  T
Q  661 aaaattagtttgtacataag 680  Q
    | || | |||| ||||||||    
T  6593257 agaaattgtttatacataag 6593238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 642 - 702
Target Start/End: Complemental strand, 10391329 - 10391269
Alignment:
Q  642 ttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    |||||||| |||||||||||||| ||| || ||| |||| |||||||||||||||| ||||    
T  10391329 ttattttatcttttgttataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 593 - 696
Target Start/End: Complemental strand, 36539772 - 36539668
Alignment:
Q  593 cagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatga 691  Q
    |||||||  |||| ||||| ||||||||||||||| | ||||  |||||||||||||| |||||| || | || ||| ||  ||||||| ||||||||||    
T  36539772 cagaataacttataaaaacaacttatagcttatatgaaaacaggttgactttattttatcttttgataaacaaatagcttacacataagcacttatatga 36539673  T
Q  692 taagt 696  Q
    |||||    
T  36539672 taagt 36539668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 635 - 691
Target Start/End: Original strand, 37063161 - 37063217
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatga 691  Q
    ||||||||||||||| ||||||||||| || |||||| |||||||| | ||||||||    
T  37063161 tttgactttattttatcttttgttatagaaatagtttatacataagcatttatatga 37063217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 614 - 677
Target Start/End: Complemental strand, 14932294 - 14932231
Alignment:
Q  614 cttatagcttatatagaacaatttgactttattttaacttttgttataaaattagtttgtacat 677  Q
    ||||||||||||| | |||||||| ||||||||||| |||||| ||||||| ||| || |||||    
T  14932294 cttatagcttatacaaaacaatttaactttattttatcttttgctataaaaatagattatacat 14932231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 695
Target Start/End: Original strand, 20982223 - 20982282
Alignment:
Q  636 ttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||| | ||||||||| || ||| || |||||||| ||||||||||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataag 20982282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 696
Target Start/End: Original strand, 32059642 - 32059736
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagt 696  Q
    ||||||||||  |||||||||||||| | |||| ||||||||||||||| |||  |||| ||||  || || |||||||| |||||||||||||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttatctta-gttacaaaaacagcttatacataagcacttatatgataagt 32059736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 695
Target Start/End: Complemental strand, 32172675 - 32172576
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||| ||||||||||  ||||||||||||||   ||||| ||||||| |||||| |||||||| || || |||||| ||||||||  ||| |||||||||    
T  32172675 atagcttatgaaaacagcttatagcttatatgtaaacaacttgacttcattttatcttttgttgtagaaatagtttatacataagctcttgtatgataag 32172576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 630 - 664
Target Start/End: Complemental strand, 11615496 - 11615462
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaa 664  Q
    |||||||||||||||||||| ||||||||||||||    
T  11615496 aacaatttgactttattttatcttttgttataaaa 11615462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 630 - 695
Target Start/End: Complemental strand, 11835265 - 11835199
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttat-atgataag 695  Q
    |||||||| ||||||||||| |||||||||||||| | |||| |||||||  |||||| ||||||||    
T  11835265 aacaatttaactttattttatcttttgttataaaaatggtttatacataaacacttatcatgataag 11835199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 702
Target Start/End: Original strand, 6738492 - 6738561
Alignment:
Q  633 aatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    ||||||||||||||||  ||||| ||||  || ||| || |||||||| |||||||||||||||| ||||    
T  6738492 aatttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgataagtgtttat 6738561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 635 - 692
Target Start/End: Original strand, 7096214 - 7096271
Alignment:
Q  635 tttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgat 692  Q
    ||||||||||||||| ||||||||||| || ||| || |||||||| |||| ||||||    
T  7096214 tttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 630 - 671
Target Start/End: Complemental strand, 10303789 - 10303748
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagttt 671  Q
    |||||||||||||||||||| ||||||||||| || ||||||    
T  10303789 aacaatttgactttattttatcttttgttatagaaatagttt 10303748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 694
Target Start/End: Original strand, 19113202 - 19113263
Alignment:
Q  633 aatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||| ||| ||||||||  ||||||||||||| |||||| |||||||| | |||||||||||    
T  19113202 aattcgacattattttattttttgttataaaaatagtttatacataagcaattatatgataa 19113263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 633 - 690
Target Start/End: Complemental strand, 19460107 - 19460050
Alignment:
Q  633 aatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatg 690  Q
    ||||| ||||||||||| |||||||||||||| |||| | || ||||| |||||||||    
T  19460107 aatttaactttattttatcttttgttataaaagtagtgtatagataagcacttatatg 19460050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 654 - 695
Target Start/End: Complemental strand, 23999120 - 23999079
Alignment:
Q  654 ttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||||||||||||||||| |||| ||| ||||||||||||||    
T  23999120 ttgttataaaattagtttatacacaagcacttatatgataag 23999079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 608 - 664
Target Start/End: Original strand, 42181151 - 42181208
Alignment:
Q  608 aaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaa 664  Q
    |||| ||||||||||||||| | ||| |||||||||| ||||| ||||||||||||||    
T  42181151 aaacaacttatagcttatatgaaaaccatttgactttgttttatcttttgttataaaa 42181208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 597 - 694
Target Start/End: Original strand, 17221588 - 17221686
Alignment:
Q  597 atagattatgaaaaccactta-tagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    |||| |||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||||| || ||| |||||| |||||||  ||||| |||||||    
T  17221588 atagcttatgaaaac-acttaatagcttatatgagaacaatttgactttattttaccttttgtcattaaactagtttatacataaacacttaaatgataa 17221686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 597 - 658
Target Start/End: Complemental strand, 11513920 - 11513858
Alignment:
Q  597 atagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgtt 658  Q
    |||| |||||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||    
T  11513920 atagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 590 - 697
Target Start/End: Original strand, 17952742 - 17952850
Alignment:
Q  590 ctccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttata 688  Q
    |||||| |||| ||||||||||  ||| |||||||||| | || | ||||||||||||||| ||||||||||| || ||| || || |||||  ||||||    
T  17952742 ctccaggatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttata 17952841  T
Q  689 tgataagtg 697  Q
    |||||||||    
T  17952842 tgataagtg 17952850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 560 - 664
Target Start/End: Original strand, 22681194 - 22681301
Alignment:
Q  560 cataagctgttttcagcttattttcataca--ctccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttg 656  Q
    ||||||||||||| ||||||||| ||||    ||| || |||||||||||||||  |||||||||||||| | ||||||||| |||| ||||| ||||||    
T  22681194 cataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttggctttgttttatcttttg 22681293  T
Q  657 ttataaaa 664  Q
    || |||||    
T  22681294 ttttaaaa 22681301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 604 - 697
Target Start/End: Complemental strand, 37053609 - 37053515
Alignment:
Q  604 atgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtg 697  Q
    |||||||  ||||||| ||||||| | |||| |||||||||||||||  || ||||||| || |||| | |||||||| ||||||||||||||||    
T  37053609 atgaaaaaaacttataacttatatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataagtg 37053515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 616 - 664
Target Start/End: Complemental strand, 6546981 - 6546932
Alignment:
Q  616 tatagcttatatagaa-caatttgactttattttaacttttgttataaaa 664  Q
    ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  6546981 tatagcttatatataaacaatttgactttattttatcttttgttataaaa 6546932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 641 - 694
Target Start/End: Complemental strand, 10190256 - 10190203
Alignment:
Q  641 tttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||||| | |||||||||||| |||||| |||||||| |||||||||||||    
T  10190256 tttattttatcctttgttataaaaatagtttatacataagcacttatatgataa 10190203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 40837350 - 40837387
Alignment:
Q  459 taggcttgttttgattggcttatttgagcttatctact 496  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  40837350 taggcttgtttggattggcttatttgagcttatctact 40837387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 597 - 696
Target Start/End: Complemental strand, 10143194 - 10143094
Alignment:
Q  597 atagattatgaaaaccacttatagcttatatagaa-caatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    |||| |||||||||  |||||||||||||||| || || |||||||| |||||| ||||||||||| || ||  || |||||||| ||||||  ||||||    
T  10143194 atagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcacttattcgataag 10143095  T
Q  696 t 696  Q
    |    
T  10143094 t 10143094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 606 - 661
Target Start/End: Complemental strand, 10285366 - 10285310
Alignment:
Q  606 gaaaaccacttatagcttatatagaaca-atttgactttattttaacttttgttata 661  Q
    |||||| |||||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  10285366 gaaaacaacttatagcttatataaaacctatttgacattattttaacttttgttata 10285310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 615 - 694
Target Start/End: Original strand, 18962104 - 18962184
Alignment:
Q  615 ttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||||||||||| | |||| ||| ||||||||||| |||||||||||||| ||| |  |||||||| ||||| |||||||    
T  18962104 ttatagcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcacttacatgataa 18962184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 559 - 655
Target Start/End: Complemental strand, 43141933 - 43141834
Alignment:
Q  559 ccataagctgttttcagcttattttcatacactc--cagaatagattatgaaaaccacttatagcttatatag-aacaatttgactttattttaactttt 655  Q
    ||||||| ||||||||  |||||| |||| ||||  ||| |||| ||||||||||  |||||||||||||| | ||||||||||||||| |||| |||||    
T  43141933 ccataagttgttttcattttatttccataaactcttcaggatagcttatgaaaacatcttatagcttatatggaaacaatttgactttactttatctttt 43141834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 496
Target Start/End: Complemental strand, 3312232 - 3312197
Alignment:
Q  461 ggcttgttttgattggcttatttgagcttatctact 496  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3312232 ggcttgtttggattggcttatttgagcttatctact 3312197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 585
Target Start/End: Complemental strand, 13224287 - 13224232
Alignment:
Q  530 agagcttaataaaataactaatgatacgtccataagctgttttcagcttattttca 585  Q
    ||||||||  ||||||| |||||||| ||||||||||||||| ||| |||||||||    
T  13224287 agagcttacgaaaataattaatgatatgtccataagctgtttacagattattttca 13224232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 561 - 655
Target Start/End: Complemental strand, 9395190 - 9395093
Alignment:
Q  561 ataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat-agaacaatttgactttattttaactttt 655  Q
    |||||||||||||||||||||||||||  | || |||||||  | ||||||||  ||||||| |||||| | ||||||||  |||||||||| |||||    
T  9395190 ataagctgttttcagcttattttcataagctctacagaataactaatgaaaacagcttatagattatatgaaaacaatttagctttattttatctttt 9395093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 590 - 695
Target Start/End: Original strand, 28803547 - 28803653
Alignment:
Q  590 ctccagaatagattatgaaaaccacttatagcttatatagaa-caatttgactttattttaacttttgttataaaattagtttgtacataagaacttata 688  Q
    |||||| |||| ||| |||||| |||| ||||||||||  || || ||||||||||||||| ||||||||||  || ||  || || ||||| |||||||    
T  28803547 ctccaggatagtttaagaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatataagcacttata 28803646  T
Q  689 tgataag 695  Q
    |||||||    
T  28803647 tgataag 28803653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 548 - 627
Target Start/End: Complemental strand, 39983415 - 39983334
Alignment:
Q  548 taatgatacgtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttatat 627  Q
    |||||| | ||| ||||||| ||||||| ||||||||||   | |||||| |||| |||||||||| |||||||||||||||    
T  39983415 taatgacatgtctataagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagcttatat 39983334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 616 - 688
Target Start/End: Complemental strand, 28902080 - 28902007
Alignment:
Q  616 tatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttata 688  Q
    |||||||||||| | |||| ||| | ||||||||||||| |||||||||| ||| || |||||||| |||||||    
T  28902080 tatagcttatatgaaaacagtttaattttattttaacttatgttataaaaatagcttatacataagcacttata 28902007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 693
Target Start/End: Complemental strand, 31461428 - 31461363
Alignment:
Q  628 agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    |||| ||||||||||||||||| ||||||||||| || ||| || || ||||  ||||||||||||    
T  31461428 agaataatttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgata 31461363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 630 - 695
Target Start/End: Original strand, 33197321 - 33197386
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataag 695  Q
    ||||| ||||||||||| || ||||||||||| || ||| || || ||||| ||||||||||||||    
T  33197321 aacaacttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataag 33197386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 637 - 702
Target Start/End: Complemental strand, 34339104 - 34339039
Alignment:
Q  637 tgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttat 702  Q
    ||||||||||||| |||| | |||| ||  ||||| |||||||| |||||||||||||||| ||||    
T  34339104 tgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 545 - 654
Target Start/End: Complemental strand, 35485993 - 35485881
Alignment:
Q  545 aactaatgatacgtccataagctgttttcagcttattttcata--cactccagaatagattatgaaaaccacttatagcttat-atagaacaatttgact 641  Q
    |||| |||||| || |||||||||||||||||| |||| ||||  | || ||| |||| |||| ||||| ||||||||||||| ||  || | |||||||    
T  35485993 aacttatgatatgttcataagctgttttcagctcatttccataggctcttcaggatagcttataaaaacaacttatagcttataatgaaatagtttgact 35485894  T
Q  642 ttattttaacttt 654  Q
    |||||||| ||||    
T  35485893 ttattttatcttt 35485881  T

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Target: scaffold0654 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 630 - 703
Target Start/End: Original strand, 6719 - 6792
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttata 703  Q
    ||||||||||||| | ||||  |||||||||| || |||||| |||||||| |||||||||||||||| |||||    
T  6719 aacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttata 6792  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 630 - 703
Target Start/End: Original strand, 116638 - 116711
Alignment:
Q  630 aacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataagtggttata 703  Q
    ||||||||||||| | ||||  |||||||||| || |||||| |||||||| |||||||||||||||| |||||    
T  116638 aacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttata 116711  T

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Target: scaffold0590 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 615 - 693
Target Start/End: Original strand, 1140 - 1219
Alignment:
Q  615 ttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    |||| |||||||| |||| | ||||||||||||||| ||||||||||| || ||| || |||||||| ||||||||||||    
T  1140 ttatggcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

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Target: scaffold0275 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 615 - 693
Target Start/End: Complemental strand, 2835 - 2756
Alignment:
Q  615 ttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgata 693  Q
    |||| |||||||| |||| | ||||||||||||||| ||||||||||| || ||| || |||||||| ||||||||||||    
T  2835 ttatggcttatatgagaatagtttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 596 - 694
Target Start/End: Complemental strand, 42639 - 42541
Alignment:
Q  596 aatagattatgaaaaccacttatagcttatatagaacaatttgactttattttaacttttgttataaaattagtttgtacataagaacttatatgataa 694  Q
    ||||| |||||||||| ||| |||||||||||  ||||  || ||| ||||||| ||||||||||| || |   || |||||||| |||||||||||||    
T  42639 aatagcttatgaaaacaactaatagcttatatgaaacaggtttactctattttatcttttgttatagaaatgacttatacataagcacttatatgataa 42541  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 686
Target Start/End: Complemental strand, 20196 - 20111
Alignment:
Q  602 ttatgaaaaccacttatagcttatat-agaacaatttgactttattttaacttttgttataaaattagtttgtacataagaactta 686  Q
    |||||||||| ||| ||||||||||| | |||  ||||||||||||||| |||| |||||| || |||| | |||||||| |||||    
T  20196 ttatgaaaacaactaatagcttatatgataactgtttgactttattttatctttggttatagaaatagtatatacataagcactta 20111  T

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