View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4396-Insertion-3 (Length: 1036)

Name: NF4396-Insertion-3
Description: NF4396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4396-Insertion-3
NF4396-Insertion-3
[»] chr7 (4 HSPs)
chr7 (444-1023)||(48017243-48017825)
chr7 (11-368)||(48016814-48017169)
chr7 (13-84)||(48012298-48012370)
chr7 (50-84)||(48012697-48012731)
[»] chr5 (1 HSPs)
chr5 (8-62)||(1414375-1414429)


Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 444 - 1023
Target Start/End: Original strand, 48017243 - 48017825
Alignment:
Q  444 cttataaagaactcatgagtgaaaatgaacagttaaaaaatatttgggcgaaaacaatttgtagttaatttttattttgaaaagtgtactttaaagtctt 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48017243 cttataaagaactcatgagtgaaaatgaacagttaaaaaatatttgggcgaaaacaatttgtagttaatttttattttgaaaagtgtactttaaagtctt 48017342  T
Q  544 cactacttatactagnnnnnnnngtaggggaaaacaacatattgacaatataaaaattgggggaaaattgagcttggcatttgatatattaaagtcattc 643  Q
    |||||||||||||||           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48017343 cactacttatactagaaaaaaggtagggggaaaacaacatattgacaaaataaaaattgggggaaaattgagcttggcatttgatatattaaagtcattc 48017442  T
Q  644 aaatgttaccatttccagtcatgttttatgcactcaatcgacaaacaagaaggacgtaagtggcagaaacaagaatggaaatggctcaacaacaatttta 743  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48017443 aaatgttaccatttccagtcatgttttatgcactcaatcaacaaacaagaaggacgtaagtggcagaaacaagaatggaaatggctcaacaacaatttta 48017542  T
Q  744 tatttacgtacaagtaaagaatatgtaacatgaaactagctatcagagaaagatgacttggacgtgaattaactagctaattaattttagaattatacta 843  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48017543 tatttacgtacaagtaaagaatatgtaacatgaaactagctatcagagaaagatgacttggacgtgaattaactagctaattaattttagaattatacta 48017642  T
Q  844 catatatataattaagtact-aactggaatgaaagaaatagtgattatcacgagtttaatataatcatttgatgatcacgagcattgtggattgttgcca 942  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48017643 catatatataattaagtactaaactggaatgaaagaaatagtgatgatcaccagtttaatataatcatttgatgatcacgagcattgtggattgttgcca 48017742  T
Q  943 ggac--acatagtaaaagtatgtgccccatttgttgttgtaggagctcttgatattgtaacagtttttgttctgggctaaggt 1023  Q
    || |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48017743 gggccaccatagtaaaagtatgtgccccatttgttgttgtaggagctcttgatattgtaacagtttttgttctgggctaaggt 48017825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 48016814 - 48017169
Alignment:
Q  11 atgaccttggggaaaaatatcacgatcttcacacacaggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48016814 atgaccttggggaaaaatatcacgatcttcacacacaggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgta 48016913  T
Q  111 atggatcaatccgatccattttttaaatttgctatgacgaggtcttggtggaacaatcagcagcaggctaatttgaatctcttatactatta-ttatttg 209  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48016914 ctggatcaatccgatccattttttaaatttgctatgacgatgtcttggtggaacaatcagcagcaggctaatttgaatctcttatactattatttatttg 48017013  T
Q  210 gagcaaaaatgacaattgcacaaatcattagtttattagtgtttaaacgggtttacgatcctcttaatttctcaaatcaatagaggaatactgactgtct 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||    
T  48017014 gagcaaaaatgacaattgcacaaatcattagtttattagtgtttaaacgggtttacgatcctcttaatttctcaaatcaatagaggaat----actgtct 48017109  T
Q  310 cggtcaaaattaatgtaattta-nnnnnnngaaacatagtatatatgatgaaatgcattg 368  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  48017110 cggtcaaaattaatgtaatttattttttttgaaacatagtatatatgatgaaatgcattg 48017169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 48012298 - 48012370
Alignment:
Q  13 gaccttggggaaaaatatcacgatcttc-acacacaggagcatatacaatacatgtatctaacatataatttt 84  Q
    ||||||||| |||| |||||| |||||| || |||   |||||||||||||||||||||||||||||||||||    
T  48012298 gaccttgggaaaaattatcacaatcttccactcacgtaagcatatacaatacatgtatctaacatataatttt 48012370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 48012697 - 48012731
Alignment:
Q  50 agcatatacaatacatgtatctaacatataatttt 84  Q
    |||||||||||||||||||||||||||||||||||    
T  48012697 agcatatacaatacatgtatctaacatataatttt 48012731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 1414429 - 1414375
Alignment:
Q  8 actatgaccttggggaaaaatatcacgatcttcacacacaggagcatatacaata 62  Q
    |||||| |||||||||||| |||||||| |||||||||||  |||||||| ||||    
T  1414429 actatggccttggggaaaagtatcacgaacttcacacacattagcatataaaata 1414375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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