View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4396_high_3 (Length: 248)
Name: NF4396_high_3
Description: NF4396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4396_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 9966742 - 9966980
Alignment:
| Q |
1 |
cggagagaaaactctctgctgggtcaagttcgacttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaa |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9966742 |
cggagagaaaactc---gctgggtcaagttcgacttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaa |
9966838 |
T |
|
| Q |
101 |
gtttgttcaatatggttcaaggaaaagttggcttgaaaatttactatgttgatgaagaaattcctcctcgaccatcggcacctgtgccggaaaatccacc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9966839 |
gtttgttcaatatggttcgaggaaaagttggcttgaaaatttactatgttgatgaagaaattcctcctcgaccatcggcacctgtgccggaaaatccacc |
9966938 |
T |
|
| Q |
201 |
ggcaccatcgtctgatccaccttcaggaaaagtagaataatc |
242 |
Q |
| |
|
| ||||||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
9966939 |
gacaccatcgtctgagccaccttccgtaaaagtagaagaatc |
9966980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 9936588 - 9936814
Alignment:
| Q |
19 |
ctgggtcaagttcgacttagctcgacccagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9936588 |
ctgggtcaagttcgacttagctcgacacagtttgtgaaaaaaggtgaagaagctttgatttattatgagttgaagaagaaaagtttgttcaatatggttc |
9936687 |
T |
|
| Q |
119 |
aaggaaaagttggcttgaaaatttactatgttgatgaagaaat---tcctcctcgaccatcggcacctgtgccggaaaatccaccggcaccatcgtctga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9936688 |
aaggaaaagttggcttgaaaatttactatgttgatgaagaaattcctcctcctccaccaccggtacctgtgccggaaaatccaccggcaccatcgtctga |
9936787 |
T |
|
| Q |
216 |
tccaccttcaggaaaagtagaataatc |
242 |
Q |
| |
|
||||| || |||||||||||| |||| |
|
|
| T |
9936788 |
gccaccatccggaaaagtagaagaatc |
9936814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University