View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4396_low_1 (Length: 261)

Name: NF4396_low_1
Description: NF4396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4396_low_1
NF4396_low_1
[»] chr7 (1 HSPs)
chr7 (1-254)||(5468521-5468774)
[»] chr5 (8 HSPs)
chr5 (146-251)||(33823144-33823249)
chr5 (146-232)||(33750178-33750264)
chr5 (146-251)||(33867306-33867411)
chr5 (146-247)||(33763708-33763809)
chr5 (146-247)||(33904850-33904951)
chr5 (146-242)||(33736438-33736534)
chr5 (158-251)||(33698932-33699025)
chr5 (146-251)||(33680386-33680491)
[»] scaffold0001 (1 HSPs)
scaffold0001 (146-247)||(149252-149353)
[»] scaffold0247 (1 HSPs)
scaffold0247 (146-242)||(19854-19950)
[»] scaffold0193 (1 HSPs)
scaffold0193 (146-242)||(23302-23398)
[»] scaffold0023 (1 HSPs)
scaffold0023 (146-247)||(88888-88989)
[»] chr8 (1 HSPs)
chr8 (156-251)||(21306326-21306421)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 5468774 - 5468521
Alignment:
Q  1 gctagcaaagttttatcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatggttaatttacatttggttctatatgtgtttaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5468774 gctagcaaagttttatcaaaagaaataacattttaacaagacatgcagaaaagaaaattaaacatggttaatttacatttggttctatatgtgtttaatt 5468675  T
Q  101 tatatcatttggtagaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5468674 tatatcatttggtagaagaagtggcattcaattcattatacctgaacctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaa 5468575  T
Q  201 gccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacctatg 254  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  5468574 gccttgagtaagttgtcttcctcgtatgtccatgcaccttttttcacgcctatg 5468521  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 33823144 - 33823249
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 245  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| ||    
T  33823144 acctgttcttttgggaattaaatgccattttccttcaccatacttgtgaatgtaagccttgagtaagttgtcttcctcatatgtccatgcaccttttctc 33823243  T
Q  246 acacct 251  Q
    | ||||    
T  33823244 aaacct 33823249  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 33750178 - 33750264
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtcca 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||  ||||||||||  |||||||    
T  33750178 acctgctcttttaggaattaaatgccattttccttcaccatacttgttaatataagctttgagtaacttgtcttcctcagatgtcca 33750264  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 33867306 - 33867411
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 245  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| |||||||||||||||||| ||    
T  33867306 acctgctctttgtggaactaaatgccattttccttcaccatacttctgcatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc 33867405  T
Q  246 acacct 251  Q
    ||||||    
T  33867406 acacct 33867411  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 33763708 - 33763809
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 245  Q
    ||||||||| || ||||  ||||||||||||||||||||||||||||||||| ||||||||||||   | |||||||| |||||||| |||||| |||||    
T  33763708 acctgctctctgtggaacaaaatgccattttccttcaccatacttgttaatgcaagccttgagtagcttatcttcctcatatgtccaggcacctcttttc 33763807  T
Q  246 ac 247  Q
    ||    
T  33763808 ac 33763809  T

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Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 33904850 - 33904951
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 245  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| |||||||||||||||||| ||    
T  33904850 acctgctctttgtggaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcaccttttctc 33904949  T
Q  246 ac 247  Q
    ||    
T  33904950 ac 33904951  T

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Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 33736438 - 33736534
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 242  Q
    |||||||||||||| || ||||||||||||||||||||||||||| |  ||  ||||||||||||   |||||||||| ||||||||||||||||||    
T  33736438 acctgctctttgagaaactaaatgccattttccttcaccatacttctgtatacaagccttgagtagcttgtcttcctcatatgtccatgcacctttt 33736534  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 33698932 - 33699025
Alignment:
Q  158 aggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttcacacct 251  Q
    ||||| |||||||||||||||||||||||||||||  ||| ||||||||||||   | |||||||| |||||||||||||||||| ||| ||||    
T  33698932 aggaactaaatgccattttccttcaccatacttgtggatgcaagccttgagtagattatcttcctcatatgtccatgcaccttttctcaaacct 33699025  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 33680386 - 33680491
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 245  Q
    ||||||||||| ||||| |||||||||||| ||||||||||| || | |||  |  |||||||||   |||| ||||| |||||||||||||||||| ||    
T  33680386 acctgctcttttaggaactaaatgccatttcccttcaccatatttttgaatacagtccttgagtagattgtcctcctcatatgtccatgcaccttttctc 33680485  T
Q  246 acacct 251  Q
    | ||||    
T  33680486 aaacct 33680491  T

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Target: scaffold0001 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 149252 - 149353
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 245  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||   | ||||||||||||||||| ||||||||| ||    
T  149252 acctgctctttgaggaactaaatgccattttccttccccatacttgtcaatgcaagccttgagtagcttatcttcctcgtatgtccaggcaccttttctc 149351  T
Q  246 ac 247  Q
    ||    
T  149352 ac 149353  T

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Target: scaffold0247 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 19950 - 19854
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 242  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||  || ||||||| || ||||||||||||||||||    
T  19950 acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt 19854  T

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Target: scaffold0193 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 23398 - 23302
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcacctttt 242  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||  |||||||||||||||  || ||||||| || ||||||||||||||||||    
T  23398 acctgttctttcaggaattaaatgccattttcctacaccatgcttgagaatgtaagccttgagacagttgtcttcttcatatgtccatgcacctttt 23302  T

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Target: scaffold0023 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 88989 - 88888
Alignment:
Q  146 acctgctctttgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagctgtcttcctcgtatgtccatgcaccttttttc 245  Q
    |||||||||| |||||| || |||||||||||||| |||||||||||||||| | |||||||||||| | ||||| || |  ||||| | ||||||||||    
T  88989 acctgctcttcgaggaactagatgccattttccttgaccatacttgttaatgcatgccttgagtaagttatcttcttcattcgtccaggtaccttttttc 88890  T
Q  246 ac 247  Q
    ||    
T  88889 ac 88888  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 21306326 - 21306421
Alignment:
Q  156 tgaggaattaaatgccattttccttcaccatacttgttaatgtaagccttgagtaagct-gtcttcctcgtatgtccatgcaccttttttcacacct 251  Q
    ||||||| ||||| ||||||||||||||| ||| |||||||| ||||||||||| ||||  ||||||| ||| |||||||| |||||| ||||||||    
T  21306326 tgaggaactaaattccattttccttcaccgtacgtgttaatgcaagccttgagt-agctcatcttccttgtaagtccatgcgccttttctcacacct 21306421  T

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