View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4396_low_2 (Length: 254)
Name: NF4396_low_2
Description: NF4396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4396_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9966514 - 9966278
Alignment:
| Q |
1 |
ctataagttttctaacagtgaccattttggtagttttgtggaaatggtgtgttcaagatttgtgtttatatgggtattatttcatgcatggtataagaaa |
100 |
Q |
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| T |
9966514 |
ctataagttttctaacagtggccattttggtagttttgtggaaatggtatgtttaagatttgtgtttatatgtgtattatttcatgcatggtataagaaa |
9966415 |
T |
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| Q |
101 |
gatgaacggtggagtttgggattttgttggtat-gattgtgatgggtatgaggggtttgaaaatggtggagaaagaaggatgcattatgtttaggagagt |
199 |
Q |
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| T |
9966414 |
gatgaacggtggagtttgggattctgttggtttgggttgtgatgggtatgaggggtttgaaaatggtggagaaagaaggatgcattatgttaaggggagt |
9966315 |
T |
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| Q |
200 |
cacttatatataattttagaatatgaaaaggaatgtg |
236 |
Q |
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| T |
9966314 |
cacttatatataattttagaatatgaaaaggaatgtg |
9966278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9936345 - 9936114
Alignment:
| Q |
1 |
ctataagttttctaacagtgaccattttggtagttttgtggaaatggtgtgttcaagatttgtgtttatatgggtattatttcatgcatggtataagaaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9936345 |
ctataagttttctaacagtggccattttggtagttttgtggaaatggtgtgtttaaggtttgtgtttatatgtgtattatttcatgcatggtataagaaa |
9936246 |
T |
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| Q |
101 |
gatgaacggtggagtttgggattttgttggtatga-ttgtgatgggtatgaggggtttgaaaatggtggagaaagaaggatgcattatgtttaggagagt |
199 |
Q |
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| T |
9936245 |
-----acggtggagtttgggattttgttggtttgggttgtgatgggtatgaggggtttgaaaatggtggagaaagaaggatgcattatgttaaggggagt |
9936151 |
T |
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| Q |
200 |
cacttatatataattttagaatatgaaaaggaatgtg |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
9936150 |
cacttatatataattttagaatatgaaaaggaatgtg |
9936114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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