View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4396_low_3 (Length: 252)
Name: NF4396_low_3
Description: NF4396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4396_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 47005007 - 47005241
Alignment:
| Q |
1 |
catatacactttctgcacatttgtacgtggtctttagatcgagtcaaaatctctattaaaatttggatcattgaatcttgacacggatgtaacgattgga |
100 |
Q |
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| T |
47005007 |
catatacactttctgcacatttgtacgtggtctttagaccgagtcaaaatctctattaaaatttggatcattgaatctcgacacggatgtaacgattgga |
47005106 |
T |
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| Q |
101 |
tgaatgtccaatttttatcggctagcaatctgatttcatattctcataaagtcgtctgtttgaaggaaccaagcaaatccacaaaaaacagtgtacatnn |
200 |
Q |
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| T |
47005107 |
tgaatgtccaatttttatcggctagcaatctgatttcatattctcataaagtcgtctgtttgaaggaaccaagcaaatccacaaaaaacagtgtacataa |
47005206 |
T |
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| Q |
201 |
nnnnnntgattgaataaggaaagcaactatgaatc |
235 |
Q |
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| T |
47005207 |
aaaaaatgattgaatgaggaaagcaactatgaatc |
47005241 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 41606210 - 41606246
Alignment:
| Q |
44 |
tcaaaatctctattaaaatttggatcattgaatcttg |
80 |
Q |
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| T |
41606210 |
tcaaaatctatattaaaatttggatcattaaatcttg |
41606246 |
T |
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