View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397-Insertion-1 (Length: 1120)
Name: NF4397-Insertion-1
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 927; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 927; E-Value: 0
Query Start/End: Original strand, 8 - 1028
Target Start/End: Complemental strand, 3857621 - 3856582
Alignment:
| Q |
8 |
cctctatctaatgacttcagttttaatattgtcaagcaatgttgtcctgcaggtaactaatttgtaatgaaacaagaaagatgacacataaaaatatact |
107 |
Q |
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| T |
3857621 |
cctctatctaatgacttcagttttaatattgtcaagcaatgttgtcctgcaggtaactaatttgtaatgaaacaagaaagatgacacataaaaatatact |
3857522 |
T |
|
| Q |
108 |
tgaattactttattgttgcatttttaggcctttgctcttggagattttcctgcaccgatgtcattaagcgcgataacgtcattgtttgggggatttatga |
207 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3857521 |
tgaattactttattgttgcatttttaggcttttgctcttggagattttcctgcaccaatgtcattaagcgcgataacgtcattgtttgggggatttatga |
3857422 |
T |
|
| Q |
208 |
ctacagcagttcaattatttgacagagacaatcttaaaactggtttgcaacttgtgagttatggagatctaattggcttttccattctggtaatttctac |
307 |
Q |
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| T |
3857421 |
ctacagctgttcaattatttgacagagacaatcttaaaactggtttgcaacttgtgagttatggagatctaattggcttttccattctggtaatttctac |
3857322 |
T |
|
| Q |
308 |
tattccttatctcgcttgattgcattttgatatttatatgaaccatcggtctactctttgaaattgtagtatttagcaatttggttaatgaagttaacga |
407 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3857321 |
tattccttatctcactcgattgcattttgatatttatatgaaccatcggtctactctttgaaattgtagtatttagcaatttggttaatgaagttaacga |
3857222 |
T |
|
| Q |
408 |
aatttcaaaatgatcactgaaattaaaaatattcgataacattaatatttttgaatcggtcgatttatttcttaaattgtcctataatact--------- |
498 |
Q |
| |
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| T |
3857221 |
aatttcaaaatgatcactgaaattaaaaatattcgataacattaatatttttgaatcggtcgatttatttcttaaattgtcctataatactaatgcaatc |
3857122 |
T |
|
| Q |
499 |
------tttcaatttcaaaattcataggctggttcagtgagtggaataagcttaagcttcaatgggtgggcactaaagaaaagaggaccagtatttgtct |
592 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3857121 |
aatacttttcaatttcaaaattcataggctggttcagtgagtggaataagcttaagcttcaatgggtgggcactaaagaaaagaggaccagtatttgtct |
3857022 |
T |
|
| Q |
593 |
ccatgtttagcccaattggaacaatgtgctcagttattctctctgtctataccactggagaaactataaatattggaaggtaacttataagatgtgcaaa |
692 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3857021 |
ccatgtttagcccaattggaacaatgtgctcagttattctctctgtctataccattggagaaactataaatattggaaggtaacttataagatgtgcaaa |
3856922 |
T |
|
| Q |
693 |
ctacatatatactaaattgtataatattataattaatcaatttttaacactgcatttaatattgcagcattggtggtatgttccttatgttcagtggact |
792 |
Q |
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| T |
3856921 |
ctacatatatactaaattgtataatattataattaatcaatttttaacactgcatttaatattgcagcattggtggtatgttccttatgttcagtggact |
3856822 |
T |
|
| Q |
793 |
ctacttagttctttgggccaaagggaaagaaggatatgcagatgttggaga-ttctcagagagtgagtttgatgcaagcaagcctctcttattatgttaa |
891 |
Q |
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| T |
3856821 |
ctacttagttctttgggccaaagggaaagaaggatatgcagatgttggagatttctcagagagtgagtttgatgcaagcaagcctctcttattatgttaa |
3856722 |
T |
|
| Q |
892 |
agtgtttgtttt--caatgtgaacgagtaataatatgtacaacgtactaaacataattattattatgtttataattacacaagtaataaatttt-aaaat |
988 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3856721 |
tgtgtttgtttttcaaatgtgaacgagtaataatatgtacaatgtactaaacataattattattatgtttataattacacaagtaataaattttaaaaat |
3856622 |
T |
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| Q |
989 |
caaatgattatggcacatattctaaacaatgtagtttaga |
1028 |
Q |
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| T |
3856621 |
caaatgattatggcacatattctaaacaatgtagtttaga |
3856582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 7247457 - 7247506
Alignment:
| Q |
401 |
ttaacgaaatttcaaaatgatcactgaaattaaaaatattcgataacatt |
450 |
Q |
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|||||||||||| | |||||||| |||||||||||||||| ||||||||| |
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| T |
7247457 |
ttaacgaaattttagaatgatcattgaaattaaaaatattagataacatt |
7247506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 767 - 824
Target Start/End: Original strand, 41615503 - 41615560
Alignment:
| Q |
767 |
ggtatgttccttatgttcagtggactctacttagttctttgggccaaagggaaagaag |
824 |
Q |
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||||||||||| ||||||| || |||||||| || |||||||||||||||||||||| |
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| T |
41615503 |
ggtatgttcctcatgttcacagggctctactttgtgctttgggccaaagggaaagaag |
41615560 |
T |
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