View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397-Insertion-10 (Length: 279)
Name: NF4397-Insertion-10
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397-Insertion-10 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 37162472 - 37162743
Alignment:
| Q |
8 |
aatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcc |
107 |
Q |
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| T |
37162472 |
aatggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcc |
37162571 |
T |
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| Q |
108 |
ttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatag |
207 |
Q |
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| T |
37162572 |
ttgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatag |
37162671 |
T |
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| Q |
208 |
ctgcaatatgtaggcataaacatcaatatattttgcaattaacatattgttcttctttgatcaaaaacacat |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37162672 |
ctgcaatatgtaggcataaacatcaatatattttgcaattaacatattgttcttctttgatcaaaaaaacat |
37162743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 37154729 - 37154932
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | ||||| | || |
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| T |
37154729 |
atggtacctgaaatagtacagtcacggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagtct |
37154828 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc |
208 |
Q |
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| T |
37154829 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctcaaaacccatgttaatggcggtaaagtgatctccttgaatagc |
37154928 |
T |
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| Q |
209 |
tgca |
212 |
Q |
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|||| |
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| T |
37154929 |
tgca |
37154932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 37150648 - 37150443
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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| T |
37150648 |
atggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgtagaagatagcct |
37150549 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc |
208 |
Q |
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| T |
37150548 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgagttctcgaaacccatgttaatggcggtaaagtgatctccttgaattgc |
37150449 |
T |
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| Q |
209 |
tgcaat |
214 |
Q |
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|||||| |
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| T |
37150448 |
tgcaat |
37150443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 37159473 - 37159268
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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||||| |||||||| || || ||||| || ||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||||| ||||| |||| |
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| T |
37159473 |
atggtacctgaaatggtgcagtcacggtagaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgtagaagatagcct |
37159374 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc |
208 |
Q |
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| T |
37159373 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgagttctcgaaacccatgttaatggcggtaaagtgatctccttgaattgc |
37159274 |
T |
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| Q |
209 |
tgcaat |
214 |
Q |
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|||||| |
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| T |
37159273 |
tgcaat |
37159268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 91821 - 92026
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | ||||| |||| |
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| T |
91821 |
atggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagcct |
91920 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc |
208 |
Q |
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| ||| |||| || |||| || ||||||||||||||||| || |||||||||||||| || || ||||| ||||| ||||| |||||||| |||||| |
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| T |
91921 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctcaaaacccatattaatggcggtaaagtgatctccttgaatagc |
92020 |
T |
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| Q |
209 |
tgcaat |
214 |
Q |
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|||||| |
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| T |
92021 |
tgcaat |
92026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 95128 - 95333
Alignment:
| Q |
9 |
atggtgcctgaaattgtacaatcacgataaaattgacgcatggtgtgtacatataatgtgtcttgatatccgtccattgaacatttgtaaaagattgcct |
108 |
Q |
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||||| |||||||| ||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||||||| || ||| | ||||| |||| |
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| T |
95128 |
atggtacctgaaatagtacagtcgcggtaaaattgacgcatggcgtgtacataaagtgtgtcttgatatccatccattgagcaattgaagaagatagcct |
95227 |
T |
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| Q |
109 |
tgtctgcttggacccttatcgctactgcttgatgtttttgaggtccagctgaattctcgaatcctatattgatggctacaaagttatctccttcaatagc |
208 |
Q |
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| ||| |||| || |||| || ||||||||||||||||| || |||||||||||||| || || || || ||||| ||||| |||| ||| |||||| |
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| T |
95228 |
tatctccttgaactcttagtgccactgcttgatgtttttgtggaccagctgaattctcaaaacccatgttaatggcggtaaagtgatcttcttgaatagc |
95327 |
T |
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| Q |
209 |
tgcaat |
214 |
Q |
| |
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|||||| |
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| T |
95328 |
tgcaat |
95333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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