View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4397-Insertion-11 (Length: 194)
Name: NF4397-Insertion-11
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397-Insertion-11 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 37240247 - 37240440
Alignment:
| Q |
8 |
gctttgtctgattttggttctgctattgttccttcttgcaaagttctcaactttttcaagagcttcatacaattctctgcaatatctatagtaaggtatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37240247 |
gctttgtctgattttggttctgctattgttccttcttgcaaagttctcaactttttcaagagcttcatacaattctctgcaatatctatagtaaggtatg |
37240346 |
T |
|
| Q |
108 |
aaaatggtgtttaaacgtg-------tgctaggtaacatgggggttttgagatatttttcttggtgtttctatgtacaatttcttattttattc |
194 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37240347 |
aaaatggtgtttaaacgtgtgctaactgctaggtaacatgggggttttgagatatttttcttggtgtttctatgtacaatttcttattttattc |
37240440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University