View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4397-Insertion-13 (Length: 161)

Name: NF4397-Insertion-13
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4397-Insertion-13
NF4397-Insertion-13
[»] chr5 (1 HSPs)
chr5 (11-161)||(11983095-11983245)
[»] chr3 (1 HSPs)
chr3 (42-154)||(38938462-38938572)
[»] scaffold0133 (2 HSPs)
scaffold0133 (29-102)||(9500-9576)
scaffold0133 (29-102)||(13848-13924)
[»] chr6 (5 HSPs)
chr6 (29-154)||(16658954-16659079)
chr6 (29-102)||(16782098-16782174)
chr6 (57-160)||(16988387-16988489)
chr6 (60-122)||(16867126-16867189)
chr6 (87-122)||(18872333-18872368)
[»] chr8 (1 HSPs)
chr8 (87-122)||(13379074-13379109)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 3e-80; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 11983095 - 11983245
Alignment:
Q  11 catccactgatttaatagacaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaaccacgattcatttctgttctgatacctg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11983095 catccactgatttaatagacaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaaccacgattcatttctgttctgatacctg 11983194  T
Q  111 caaaatggctgacacttaacttaaaatcgtgattgaaagcctcgtatattc 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11983195 caaaatggctgacacttaacttaaaatcgtgattgaaagcctcgtatattc 11983245  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 154
Target Start/End: Original strand, 38938462 - 38938572
Alignment:
Q  42 catatttcatcttcatagagcaaagtcatctccaatccaaaccacgattcatttctgttctgatacctgcaaaatggctgacacttaacttaaaatcgtg 141  Q
    |||||||||||||| |||||||||| |||||||||||||||||  |||||||| ||||||| |||||||||||||||||||| ||| |||| ||||| ||    
T  38938462 catatttcatcttcctagagcaaag-catctccaatccaaaccttgattcatt-ctgttctcatacctgcaaaatggctgacgctttacttgaaatcctg 38938559  T
Q  142 attgaaagcctcg 154  Q
    ||||||| |||||    
T  38938560 attgaaaccctcg 38938572  T

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Target: scaffold0133 (Bit Score: 43; Significance: 9e-16; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 9576 - 9500
Alignment:
Q  29 acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaaccac---gattcatttctgttct 102  Q
    |||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||| ||   ||||||||||||||||    
T  9576 acaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaactttgattcatttctgttct 9500  T

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Target: scaffold0133; HSP #2
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 13924 - 13848
Alignment:
Q  29 acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaaccac---gattcatttctgttct 102  Q
    |||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||| ||   ||||||||||||||||    
T  13924 acaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaactttgattcatttctgttct 13848  T

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Target: chr6 (Bit Score: 43; Significance: 9e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 16659079 - 16658954
Alignment:
Q  29 acaaataataacgcatatttcatcttcatagagcaaagtc-atctccaatccaaaccacgattcatttctgttctgatacctgcaaaatggctgacactt 127  Q
    ||||||||||||||||||| || ||||  | ||||||||| |||||||| |||||||  | |||||||||||||| |||||| ||||||||||||  |||    
T  16659079 acaaataataacgcatatt-caacttccaaaagcaaagtctatctccaaaccaaaccttgtttcatttctgttctcatacctacaaaatggctgaagctt 16658981  T
Q  128 aacttaaaatcgtgattgaaagcctcg 154  Q
     ||||  ||||||||| |||| |||||    
T  16658980 tacttggaatcgtgatagaaaacctcg 16658954  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 16782174 - 16782098
Alignment:
Q  29 acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaaccac---gattcatttctgttct 102  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||| |||| |||| ||   ||||||||||||||||    
T  16782174 acaaataacaactcatatttcatcttcctagagcaaagtcatctctaatctaaacaactttgattcatttctgttct 16782098  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 16988489 - 16988387
Alignment:
Q  57 tagagcaaagtcatctccaatccaaaccacgattcatttctgttctgatacctgcaaaatggctgacacttaacttaaaatcgtgattgaaagcctcgta 156  Q
    |||||||||||||| |||||||||||    | |||||||||||||| ||| ||| ||| |||||||| ||| ||||  |||||||||||||| ||||| |    
T  16988489 tagagcaaagtcatttccaatccaaaatttggttcatttctgttctaatatctgtaaa-tggctgacgctttacttggaatcgtgattgaaaacctcgga 16988391  T
Q  157 tatt 160  Q
    ||||    
T  16988390 tatt 16988387  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 16867126 - 16867189
Alignment:
Q  60 agcaaagtc-atctccaatccaaaccacgattcatttctgttctgatacctgcaaaatggctga 122  Q
    ||||||||| |||||||| |||||||  | |||||||||||||| |||||| ||||||||||||    
T  16867126 agcaaagtctatctccaaaccaaaccttgtttcatttctgttctcatacctacaaaatggctga 16867189  T

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Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 18872333 - 18872368
Alignment:
Q  87 gattcatttctgttctgatacctgcaaaatggctga 122  Q
    ||||||||||||||||  ||||||||||||||||||    
T  18872333 gattcatttctgttctcgtacctgcaaaatggctga 18872368  T

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Target: chr8 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 13379109 - 13379074
Alignment:
Q  87 gattcatttctgttctgatacctgcaaaatggctga 122  Q
    |||||||||||||| | |||||||||||||||||||    
T  13379109 gattcatttctgttatcatacctgcaaaatggctga 13379074  T

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