View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397-Insertion-4 (Length: 910)
Name: NF4397-Insertion-4
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Complemental strand, 33725854 - 33725215
Alignment:
| Q |
8 |
acataaacgtcataaacaagacaccacttatattgattataaactaagcacatgcatcatgcatgcaggcannnnnnnnccccttcgttttgatcgatcc |
107 |
Q |
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| T |
33725854 |
acataaacgtcataaacaagacaccacttatattgattataaactaagcacatgcatcatgcatgcaggcattttttttccccttcgttttgatcgatcc |
33725755 |
T |
|
| Q |
108 |
tctgcttgcaagggttgaccaaaatgtcagttaattaatccatatagtttataaagaaaattataatatagcaagattacaatccacttgataattcnnn |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33725754 |
tctgcttgcaagggttgaccaaaatgtcagttaattaatccatatagtttataaagaaaattataatatagcaagattacaatccacttgataattcttt |
33725655 |
T |
|
| Q |
208 |
nnnnnnnnnnctggttacatttcgtttgtcacatccaaaacatgaatnnnnnnnntaaaataattgatatggctcaataaacatgttcctcaagcacaag |
307 |
Q |
| |
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| T |
33725654 |
tttagtttttctggttacatttcgtttgtcacatccaaaacatgaataaaaaaa-taaaataattgatatggctcaataaacatgttcctcaagcacaag |
33725556 |
T |
|
| Q |
308 |
atgctgtcatgctgacacagtaaggtttgctaatttcatattataacataaatttgatcaatggtgttccattaaaatacatgattgtttgaagaatacg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33725555 |
atgctgtcatgctgacacagtaaggtttgctaatttcatattataacataaatttgatcaatggtgttccattaaaatacatgattgtttgaagaatacg |
33725456 |
T |
|
| Q |
408 |
gtagtggatcattgtttatttggacttgctgaatgtacttggttctttannnnnnnnngctatgaaaatgcactcgttcttctattaaattaaattatca |
507 |
Q |
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| T |
33725455 |
gtagtggatcattgtttatttggacttgttgaatgtacttggttcttta-ttttttttgctatgaaaatgcactcgttcctctattaaattaaattatca |
33725357 |
T |
|
| Q |
508 |
ttttgcatttgtc------nnnnnnnnntatcattttgcattgagaggtgaaattgaaatattgagtctagcaataaataactcagctttaggggctgcg |
601 |
Q |
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||||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33725356 |
ttttgcatttgtcaaaaaaaaaaaaaggtatcattttgcactgagagttgaaatagaaatattgagtctagcaataaataactcagctttaggggctgcg |
33725257 |
T |
|
| Q |
602 |
gaaatagattcttctaattggtaatttttttatattatctaa |
643 |
Q |
| |
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| T |
33725256 |
gaaatagattcttctaattggtaatttttttatattatctaa |
33725215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 712 - 910
Target Start/End: Complemental strand, 33725146 - 33724946
Alignment:
| Q |
712 |
ttctatcgagtcgacggacaagataaaatctagttatggaggaggcgagatccatatcttcaaaatgtcaatgttatcagccttatatttaacctctcaa |
811 |
Q |
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|||||||||||||||||||||||||||||||| || || |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||| |
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| T |
33725146 |
ttctatcgagtcgacggacaagataaaatctaattgtgaaggaggcgaggtccatatcttcaaagtgtcaatgttatgagccttatatttaacctgtcaa |
33725047 |
T |
|
| Q |
812 |
ttagtatattcagtgtcttttttcaacgtgtaag-aaaagaaaccaaccaaagaaattaataaatgtataacatagtttgaat-attaaaaaatattcgg |
909 |
Q |
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||| |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33725046 |
ttaatatattcattgtcttttttcaatgtgtaagcaaaagaaaccaaccaaagaaattaataaatgtataacatagtttgaataattaaaaaatattcgg |
33724947 |
T |
|
| Q |
910 |
t |
910 |
Q |
| |
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| |
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| T |
33724946 |
t |
33724946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 719 - 786
Target Start/End: Complemental strand, 34537102 - 34537035
Alignment:
| Q |
719 |
gagtcgacggacaagataaaatctagttatggaggaggcgagatccatatcttcaaaatgtcaatgtt |
786 |
Q |
| |
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|||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||| |
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| T |
34537102 |
gagtcggcgaacaagatagaatctagttgtggaggaggagagatccatatcttcaaagtgtcaatgtt |
34537035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 48089419 - 48089356
Alignment:
| Q |
741 |
ctagttatggaggaggcgagatccatatcttcaaaatgtcaatgttatcagccttatatttaac |
804 |
Q |
| |
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|||||| ||||||||| ||| | |||||||||||| |||||||||| |||||| ||||||||| |
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| T |
48089419 |
ctagttgtggaggaggagaggtgcatatcttcaaagtgtcaatgttgtcagccccatatttaac |
48089356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 729 - 786
Target Start/End: Complemental strand, 27545901 - 27545844
Alignment:
| Q |
729 |
acaagataaaatctagttatggaggaggcgagatccatatcttcaaaatgtcaatgtt |
786 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||||||| || |||||||||| |
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| T |
27545901 |
acaagataaaatctagttgcaaaggaggagagatccatatcttcgaagtgtcaatgtt |
27545844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 729 - 794
Target Start/End: Original strand, 18430208 - 18430273
Alignment:
| Q |
729 |
acaagataaaatctagttatggaggaggcgagatccatatcttcaaaatgtcaatgttatcagcct |
794 |
Q |
| |
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||||||||| |||||||| | ||||| | || |||||||||||||| |||||||||| ||||||| |
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| T |
18430208 |
acaagataacatctagttgtagaggaagagaagtccatatcttcaaagtgtcaatgttttcagcct |
18430273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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