View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4397-Insertion-5 (Length: 822)

Name: NF4397-Insertion-5
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4397-Insertion-5
NF4397-Insertion-5
[»] chr5 (12 HSPs)
chr5 (8-756)||(5215626-5216385)
chr5 (657-753)||(9177905-9178000)
chr5 (678-740)||(1839995-1840056)
chr5 (666-711)||(12605656-12605701)
chr5 (657-753)||(29385345-29385449)
chr5 (763-819)||(5215540-5215596)
chr5 (682-753)||(19417473-19417543)
chr5 (659-741)||(896274-896355)
chr5 (662-735)||(23219360-23219432)
chr5 (657-741)||(22097454-22097538)
chr5 (648-691)||(4376473-4376516)
chr5 (683-756)||(36568733-36568805)
[»] chr7 (9 HSPs)
chr7 (652-753)||(17272697-17272797)
chr7 (657-734)||(7211863-7211939)
chr7 (657-743)||(25099319-25099404)
chr7 (657-737)||(46282871-46282951)
chr7 (668-753)||(7211958-7212042)
chr7 (657-707)||(32315710-32315760)
chr7 (665-726)||(29681776-29681837)
chr7 (665-707)||(7169800-7169842)
chr7 (657-716)||(32315795-32315854)
[»] chr2 (6 HSPs)
chr2 (657-756)||(7755339-7755437)
chr2 (657-753)||(39819057-39819161)
chr2 (657-753)||(15562207-15562302)
chr2 (660-752)||(13421750-13421841)
chr2 (682-753)||(12918561-12918631)
chr2 (657-702)||(5095753-5095798)
[»] chr3 (11 HSPs)
chr3 (657-741)||(11512390-11512473)
chr3 (657-753)||(31342010-31342105)
chr3 (657-756)||(22893957-22894054)
chr3 (657-707)||(29081704-29081754)
chr3 (678-753)||(20286928-20287002)
chr3 (660-707)||(48342793-48342840)
chr3 (666-707)||(28309087-28309128)
chr3 (662-703)||(32385366-32385407)
chr3 (662-701)||(36738372-36738411)
chr3 (657-691)||(49159508-49159542)
chr3 (668-741)||(20496548-20496619)
[»] chr1 (14 HSPs)
chr1 (657-741)||(28739385-28739468)
chr1 (660-753)||(50754730-50754822)
chr1 (682-753)||(9884869-9884939)
chr1 (657-741)||(28045322-28045404)
chr1 (682-756)||(15928130-15928204)
chr1 (657-753)||(6539619-6539723)
chr1 (686-753)||(9379850-9379916)
chr1 (660-707)||(10449454-10449501)
chr1 (660-707)||(44801758-44801805)
chr1 (657-707)||(45215266-45215316)
chr1 (670-707)||(28810065-28810102)
chr1 (682-724)||(421156-421198)
chr1 (660-701)||(39128298-39128339)
chr1 (659-707)||(45215168-45215214)
[»] chr6 (7 HSPs)
chr6 (659-752)||(2543805-2543896)
chr6 (660-707)||(16193834-16193881)
chr6 (657-753)||(11448060-11448155)
chr6 (660-792)||(369444-369571)
chr6 (665-716)||(2980791-2980842)
chr6 (660-705)||(28581738-28581783)
chr6 (657-689)||(369441-369473)
[»] chr4 (8 HSPs)
chr4 (657-753)||(31846851-31846955)
chr4 (657-707)||(11392304-11392354)
chr4 (682-753)||(6607455-6607525)
chr4 (657-706)||(30023486-30023535)
chr4 (663-707)||(30023650-30023694)
chr4 (668-707)||(39336297-39336336)
chr4 (660-707)||(53261096-53261143)
chr4 (662-707)||(54223561-54223606)
[»] scaffold1315 (1 HSPs)
scaffold1315 (659-707)||(1818-1866)
[»] scaffold1293 (1 HSPs)
scaffold1293 (659-707)||(205-253)
[»] chr8 (3 HSPs)
chr8 (662-701)||(33763466-33763505)
chr8 (682-753)||(43465114-43465184)
chr8 (666-707)||(45051343-45051384)
[»] scaffold0312 (1 HSPs)
scaffold0312 (682-724)||(9373-9415)
[»] scaffold0110 (1 HSPs)
scaffold0110 (666-707)||(26512-26553)


Alignment Details
Target: chr5 (Bit Score: 644; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 8 - 756
Target Start/End: Complemental strand, 5216385 - 5215626
Alignment:
Q  8 cttgctaattaatctaatcactgttttgaacaaccaactt-----------aaacttctatagaattcataacagaagnnnnnnnnnntgaaaatatctg 96  Q
    ||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||          |||||||||||     
T  5216385 cttgctaattaatctaatcactgttttgaacaaccaacttggtcgtttcagaaacttctatagaattcataacagaagaaaaaaaaa-tgaaaatatcta 5216287  T
Q  97 aaattacaaagaaattataccttaggttttggttt-gagaaagaaatggatcaaagaaaacttgattttctatttttgggtgtggaaagtggaaagacaa 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5216286 aaattacaaagaaattataccttaggttttggttttgagaaagaaatggatcaaagaaaacttgattttctatttttgggtgtggaaagtggaaagacaa 5216187  T
Q  196 gtgttgtttgttgcatatatatagcaaaacgaaatctgaaatgcaagactcagttttctgtggtattgtagaattatgaaaacagggaattaggtttttc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5216186 gtgttgtttgttgcatatatatagcaaaacgaaatctgaaatgcaagactcagttttctgtggtattgtagaattatgaaaacagggaattaggtttttc 5216087  T
Q  296 cactgtcttgcagcaatgataataagtgtcatatatacaacgagcgttccaaatatcttgagatgataatggaaatgaaattaaagaaggaaatatgtat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5216086 cactgtcttgcagcaatgataataagtgtcatatatacaacgagcgttccaaatatcttgagatgataatggaaatgaaattaaagaaggaaatatgtat 5215987  T
Q  396 taaagagaattaatgttatatatattttgagaaattagaatctggaaatgcttctttaagaatggtcgtggcttttggtgataggatgaatatacgaggg 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5215986 taaagagaattaatgttatatatattttgagaaattagaatctggaaatgcttctttaagaatggtcgtggcttttggtgataggatgaatatacgaggg 5215887  T
Q  496 ttgttttgttttggcgtcagaatcgggaatctggtggaacaaaacctttctttgcaaaatgagagaaagagtcacgagggctaatctagtagtgacttag 595  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5215886 ttgttttgttttggcgttagaatcgggaatctggtggaacaaaacctttctttgcaaaatgagagaaagagtcacgagggctaatctagtagtgacttag 5215787  T
Q  596 gaacaggtaggctttagagatctctttcaaatactgccacgtgtgcctcttgttttcaggaagcacttgggtgacattgtggttgatgacattggtcaac 695  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  5215786 gaacaggtaggctttagagatctctttcaaatactggcacgtgtgcctcttgttttcgggcaacacttgggtgacattgtggttgatgacattggtcaac 5215687  T
Q  696 cacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttgtac 756  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  5215686 cacaatatcacatgtggcttttcttatttttctttcacaagattttgttgttgttttgtac 5215626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 657 - 753
Target Start/End: Complemental strand, 9178000 - 9177905
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    ||||||||| |||||||||||||| ||| ||||| |||||||||| ||||| ||| | |||||| |||||||||||||| ||||| || ||||||||    
T  9178000 agcacttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgac-tttcttctttttctttcacaatatttttttattgttttg 9177905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 678 - 740
Target Start/End: Original strand, 1839995 - 1840056
Alignment:
Q  678 ttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattt 740  Q
    ||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||||||    
T  1839995 ttgatgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttcacaagattt 1840056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 666 - 711
Target Start/End: Complemental strand, 12605701 - 12605656
Alignment:
Q  666 gtgacattgtggttgatgacattggtcaaccacaatgtcacacgtg 711  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  12605701 gtgacattgtggttggtgacattggtcaaccacaatgtcacacgtg 12605656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 657 - 753
Target Start/End: Complemental strand, 29385449 - 29385345
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggt---------caaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttctt 747  Q
    |||||||||||||||||||||||| ||||||||||         |||||||||||||||| ||||| |||||| |||||||||| | ||||||| || ||    
T  29385449 agcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttcgctagatttttttgtt 29385351  T
Q  748 gttttg 753  Q
    ||||||    
T  29385350 gttttg 29385345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 763 - 819
Target Start/End: Complemental strand, 5215596 - 5215540
Alignment:
Q  763 caatgttatcaaccacaatgtcacccaagtattattccttgttttcttggtagcact 819  Q
    |||||||| |||||||||||||||||||||||||| | ||||||| ||||| |||||    
T  5215596 caatgttaccaaccacaatgtcacccaagtattatccgttgtttttttggtggcact 5215540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 682 - 753
Target Start/End: Original strand, 19417473 - 19417543
Alignment:
Q  682 tgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    |||||||||||||| ||||||||||| ||| | ||||||  ||||||||||||||||||| || ||||||||    
T  19417473 tgacattggtcaactacaatgtcacatgtgac-tttctttcttttctttcacaagatttttttgttgttttg 19417543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 741
Target Start/End: Original strand, 896274 - 896355
Alignment:
Q  659 cacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagatttt 741  Q
    ||||||||||| |||||||||| ||| |||| ||||||||||||||||| | || ||||||| ||| ||||| ||||| ||||    
T  896274 cacttgggtgagattgtggttggtgatattgatcaaccacaatgtcacaggcgg-ttttcttctttctcttttacaagttttt 896355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 735
Target Start/End: Complemental strand, 23219432 - 23219360
Alignment:
Q  662 ttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaa 735  Q
    ||||||||||||||||||| |||| |||| |||||||||||||| |  || | |||||| ||||||||||||||    
T  23219432 ttgggtgacattgtggttggtgaccttggccaaccacaatgtcatatatgac-tttcttctttttctttcacaa 23219360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 657 - 741
Target Start/End: Complemental strand, 22097538 - 22097454
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagatttt 741  Q
    ||||||||  ||||||||| |||| |||||||||||||| |||||||||||  |  |||||||| ||| ||||| ||| ||||||    
T  22097538 agcacttgaatgacattgtagttggtgacattggtcaactacaatgtcacaaataacttttcttctttatcttttacatgatttt 22097454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 691
Target Start/End: Complemental strand, 4376516 - 4376473
Alignment:
Q  648 ttttcaggaagcacttgggtgacattgtggttgatgacattggt 691  Q
    ||||| || |||||||| ||||||||||||||||||||||||||    
T  4376516 ttttcgggtagcacttgagtgacattgtggttgatgacattggt 4376473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 683 - 756
Target Start/End: Original strand, 36568733 - 36568805
Alignment:
Q  683 gacattggtcaaccac-aatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttgtac 756  Q
    |||||||||||||||| ||||||||| ||||| ||||||  ||||||||||||| ||||| || |||||||||||    
T  36568733 gacattggtcaaccacaaatgtcacatgtggc-tttcttccttttctttcacaatatttt-ttgttgttttgtac 36568805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 652 - 753
Target Start/End: Original strand, 17272697 - 17272797
Alignment:
Q  652 caggaagcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttt 751  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||||||| || ||||||    
T  17272697 caggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttcacaagatttttttgttgttt 17272795  T
Q  752 tg 753  Q
    ||    
T  17272796 tg 17272797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 657 - 734
Target Start/End: Original strand, 7211863 - 7211939
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcaca 734  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||| |||||||||||||    
T  7211863 agcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttcaca 7211939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 657 - 743
Target Start/End: Complemental strand, 25099404 - 25099319
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgt 743  Q
    |||||||| |||| |||||||||| |||| ||||||||||||||||||||| ||| | |||||| |||||||||||||| |||||||    
T  25099404 agcacttgagtgaaattgtggttggtgactttggtcaaccacaatgtcacaagtgtc-tttcttctttttctttcacaatattttgt 25099319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 657 - 737
Target Start/End: Original strand, 46282871 - 46282951
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaaga 737  Q
    |||||||| |||||||||| |||| ||||||||| |||||||||| ||||| |||| ||||||| ||| ||||||||||||    
T  46282871 agcacttgagtgacattgtagttggtgacattggccaaccacaatatcacaagtggtttttcttctttctctttcacaaga 46282951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 668 - 753
Target Start/End: Complemental strand, 7212042 - 7211958
Alignment:
Q  668 gacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    ||||||||||| |  |||||||| |||||||||||||||| ||| |||| ||| |||||||||||||||||||| || ||||||||    
T  7212042 gacattgtggtgggagacattggccaaccacaatgtcacatgtgacttt-cttctttttctttcacaagatttttttgttgttttg 7211958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 657 - 707
Target Start/End: Original strand, 32315710 - 32315760
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  32315710 agcacttgcgtgacattgtggttggtgacattggccaaccacaatgtcaca 32315760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 665 - 726
Target Start/End: Original strand, 29681776 - 29681837
Alignment:
Q  665 ggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttattttt 726  Q
    |||||||||||||||| ||||||||| ||||||||| |||||| ||||||||| || |||||    
T  29681776 ggtgacattgtggttggtgacattggccaaccacaacgtcacatgtggcttttttttttttt 29681837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 707
Target Start/End: Complemental strand, 7169842 - 7169800
Alignment:
Q  665 ggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  7169842 ggtgacattctggttgatgacattggtcaatcacaatgtcaca 7169800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 716
Target Start/End: Complemental strand, 32315854 - 32315795
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttt 716  Q
    |||| |||||| | |||||||||| |||||||||||||| ||||||||| | ||||||||    
T  32315854 agcagttgggtcaaattgtggttggtgacattggtcaactacaatgtcagaagtggcttt 32315795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 657 - 756
Target Start/End: Original strand, 7755339 - 7755437
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttgtac 756  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| || ||||||||| |||||||||| || |||||||||||    
T  7755339 agcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggctttt-ttctttttctttaacaagatttttttgttgttttgtac 7755437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 657 - 753
Target Start/End: Original strand, 39819057 - 39819161
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggt---------caaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttctt 747  Q
    |||||||||||||||||||||||| ||||||||||         |||||||||||||||| ||||| |||||| |||||||||||||||||||| || ||    
T  39819057 agcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttcacaagatttttttgtt 39819155  T
Q  748 gttttg 753  Q
    ||||||    
T  39819156 gttttg 39819161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 657 - 753
Target Start/End: Original strand, 15562207 - 15562302
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| | |||||| |||||  |||||  |||||| || ||||||||    
T  15562207 agcatttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgac-tttcttcttttttattcactggatttttttgttgttttg 15562302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 660 - 752
Target Start/End: Complemental strand, 13421841 - 13421750
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgtttt 752  Q
    ||||||||||||||||||||| ||||||||  ||||||||| || ||| ||| | |||||| ||||||||| || ||||||| || |||||||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttacatgtgac-tttcttttttttcttttacgagatttttttgttgtttt 13421750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 682 - 753
Target Start/End: Original strand, 12918561 - 12918631
Alignment:
Q  682 tgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    ||||||||| |||||||||||||||| ||||||||| || ||||||||||| |||| ||| || ||||||||    
T  12918561 tgacattggccaaccacaatgtcacatgtggctttt-ttctttttctttcataagacttttttgttgttttg 12918631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 657 - 702
Target Start/End: Original strand, 5095753 - 5095798
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatg 702  Q
    ||||||||||||| |||||||||| ||||||| | |||||||||||    
T  5095753 agcacttgggtgatattgtggttggtgacattagacaaccacaatg 5095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 9e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 657 - 741
Target Start/End: Original strand, 11512390 - 11512473
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagatttt 741  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  11512390 agcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttcacaagatttt 11512473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 657 - 753
Target Start/End: Original strand, 31342010 - 31342105
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    |||| |||| |||||||||||||| ||||||||| |||||||||||||||| || || |||||| |||||||||||||||||||| || ||||||||    
T  31342010 agcatttggatgacattgtggttggtgacattggccaaccacaatgtcacatgtagc-tttcttctttttctttcacaagatttttttgttgttttg 31342105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 657 - 756
Target Start/End: Complemental strand, 22894054 - 22893957
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttgtac 756  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||||| ||| | |||||| ||||||||| |||||||||| || |||||||||||    
T  22894054 agcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgac-tttcttctttttctttaacaagatttt-ttgttgttttgtac 22893957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 657 - 707
Target Start/End: Complemental strand, 29081754 - 29081704
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  29081754 agcacttgggtgatattgtggttggtgacattggtcaaccacaatgtcaca 29081704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 678 - 753
Target Start/End: Original strand, 20286928 - 20287002
Alignment:
Q  678 ttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    ||||||||||||| |||||||||||||||| ||||| |||||| ||||||||| |||||| ||| || ||||||||    
T  20286928 ttgatgacattggccaaccacaatgtcacatgtggc-tttcttctttttcttttacaagacttttttgttgttttg 20287002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 660 - 707
Target Start/End: Original strand, 48342793 - 48342840
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||||    
T  48342793 acttgggtgacattatggttggcgacattggtcaaccacaatgtcaca 48342840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 707
Target Start/End: Original strand, 28309087 - 28309128
Alignment:
Q  666 gtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  28309087 gtgacattgtggttgatgacattgatcaaccacaatatcaca 28309128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 703
Target Start/End: Original strand, 32385366 - 32385407
Alignment:
Q  662 ttgggtgacattgtggttgatgacattggtcaaccacaatgt 703  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  32385366 ttgggtgacattgtgattggtgacattggtcaaccacaatgt 32385407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 701
Target Start/End: Complemental strand, 36738411 - 36738372
Alignment:
Q  662 ttgggtgacattgtggttgatgacattggtcaaccacaat 701  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  36738411 ttgggtgacattgtggttggtgacattggtcaactacaat 36738372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 657 - 691
Target Start/End: Complemental strand, 49159542 - 49159508
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggt 691  Q
    |||||||||||||||||||||||| ||||||||||    
T  49159542 agcacttgggtgacattgtggttggtgacattggt 49159508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 668 - 741
Target Start/End: Complemental strand, 20496619 - 20496548
Alignment:
Q  668 gacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagatttt 741  Q
    |||| |||||||| |||||||| ||||||||||||||||||||| | |||||| | | ||||||||||| ||||    
T  20496619 gacaatgtggttggtgacattg-tcaaccacaatgtcacacgtgac-tttcttctctctctttcacaagttttt 20496548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 657 - 741
Target Start/End: Complemental strand, 28739468 - 28739385
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagatttt 741  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| || ||||||||| ||||||||||    
T  28739468 agcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttt-ttctttttcttttacaagatttt 28739385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 660 - 753
Target Start/End: Original strand, 50754730 - 50754822
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||| ||||||||| |||||||||| || ||||||||    
T  50754730 actttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggc-tttcttctttttcttttacaagatttttttgttgttttg 50754822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 682 - 753
Target Start/End: Original strand, 9884869 - 9884939
Alignment:
Q  682 tgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| || ||||||||    
T  9884869 tgacattggtcaaccacaatgtcacatgtggc-tttcttctttttctttcacaagatttttttgttgttttg 9884939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 657 - 741
Target Start/End: Original strand, 28045322 - 28045404
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagatttt 741  Q
    |||||||||||||||||||||||| ||| ||||| |||||| ||||||||| ||||| |||||| ||||||||| ||||||||||    
T  28045322 agcacttgggtgacattgtggttggtga-attggccaaccataatgtcacaagtggc-tttcttctttttctttaacaagatttt 28045404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 682 - 756
Target Start/End: Complemental strand, 15928204 - 15928130
Alignment:
Q  682 tgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaaga-ttttgttcttgttttgtac 756  Q
    ||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||| ||||||| |||||||||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggc-tttcttctttttctttcacaagatttttgttgttgttttgtac 15928130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 657 - 753
Target Start/End: Complemental strand, 6539723 - 6539619
Alignment:
Q  657 agcacttgggtgacattgtggttgatga---------cattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttctt 747  Q
    ||||||||||||||||||||||||||||         ||||||||||||||||||||||| ||| | |||||| |||||||||||||||| ||| || ||    
T  6539723 agcacttgggtgacattgtggttgatgatattggtgacattggtcaaccacaatgtcacatgtgac-tttcttctttttctttcacaagacttttttgtt 6539625  T
Q  748 gttttg 753  Q
    ||||||    
T  6539624 gttttg 6539619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 686 - 753
Target Start/End: Original strand, 9379850 - 9379916
Alignment:
Q  686 attggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    ||||| |||||||||||||||| |||||||| ||| |||||||||||||||||||| || ||||||||    
T  9379850 attggccaaccacaatgtcacatgtggcttt-cttctttttctttcacaagatttttttgttgttttg 9379916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 660 - 707
Target Start/End: Original strand, 10449454 - 10449501
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  10449454 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcaca 10449501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 660 - 707
Target Start/End: Original strand, 44801758 - 44801805
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  44801758 acttaggtgatattgtggttgatgacattggccaaccacaatgtcaca 44801805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 707
Target Start/End: Complemental strand, 45215316 - 45215266
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||||||||| ||   ||||||||||||||||||||||||||||    
T  45215316 agcacttgggtgacattatgaaagatgacattggtcaaccacaatgtcaca 45215266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 707
Target Start/End: Complemental strand, 28810102 - 28810065
Alignment:
Q  670 cattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  28810102 cattgtggttggtgacattggtcaaccacaatgtcaca 28810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 724
Target Start/End: Original strand, 421156 - 421198
Alignment:
Q  682 tgacattggtcaaccacaatgtcacacgtggcttttcttattt 724  Q
    |||||||||||||||||||||| |||  |||||||||||||||    
T  421156 tgacattggtcaaccacaatgttacaactggcttttcttattt 421198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 701
Target Start/End: Complemental strand, 39128339 - 39128298
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaat 701  Q
    |||||||| |||||| |||||||||||| |||||||||||||    
T  39128339 acttgggtaacattggggttgatgacatcggtcaaccacaat 39128298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 707
Target Start/End: Original strand, 45215168 - 45215214
Alignment:
Q  659 cacttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||| |||||||||   |||||||||||||||||||||||||    
T  45215168 cacttgggtgatattgtggttc--gacattggtcaaccacaatgtcaca 45215214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 659 - 752
Target Start/End: Complemental strand, 2543896 - 2543805
Alignment:
Q  659 cacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgtttt 752  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| || |||||||||||||| ||||| || |||||||    
T  2543896 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttt-ttttttttctttcacaa-atttttttgttgtttt 2543805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 660 - 707
Target Start/End: Complemental strand, 16193881 - 16193834
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16193881 acttgggtgacattgtggttggtgacattggtcaaccacaatgtcaca 16193834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 753
Target Start/End: Original strand, 11448060 - 11448155
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    |||||||||||||||||||||||| | | ||||| |||||||||||| | | || |||||| || ||||||||||||||  |||| || ||||||||    
T  11448060 agcacttgggtgacattgtggttggtaatattggccaaccacaatgttatatgtagctttt-ttctttttctttcacaaattttttttgttgttttg 11448155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 660 - 792
Target Start/End: Complemental strand, 369571 - 369444
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttgtaccaa 759  Q
    ||||| ||||||||||||||| ||||||||  |||||||||||||||| ||| | |||||| ||| |||||||||   |||| |||    |||||||       
T  369571 acttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtc-tttcttctttctctttcacagtttttttttc----tttgtacatt 369477  T
Q  760 ccgcaatgttatcaaccacaatgtcacccaagt 792  Q
     | |||||| |||||||||||||||||||||||    
T  369476 tcacaatgtcatcaaccacaatgtcacccaagt 369444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 665 - 716
Target Start/End: Complemental strand, 2980842 - 2980791
Alignment:
Q  665 ggtgacattgtggttgatgacattggtcaaccacaatgtcacacgtggcttt 716  Q
    |||||||||||||||| ||| |||||||||||| ||||||||| ||||||||    
T  2980842 ggtgacattgtggttggtgaaattggtcaaccataatgtcacaagtggcttt 2980791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 705
Target Start/End: Original strand, 28581738 - 28581783
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtca 705  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||    
T  28581738 acttggctgacattgtggttggtgacattggccaaccacaatgtca 28581783  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 657 - 689
Target Start/End: Original strand, 369441 - 369473
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattg 689  Q
    |||||||||||||||||||||||||||||||||    
T  369441 agcacttgggtgacattgtggttgatgacattg 369473  T

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Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 657 - 753
Target Start/End: Complemental strand, 31846955 - 31846851
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggt---------caaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttctt 747  Q
    |||||||||||||||||||||||| ||||||||||         |||||||||||||||| |||||||| ||| |||||||||||||||||||| || ||    
T  31846955 agcacttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggcttt-cttctttttctttcacaagatttttttgtt 31846857  T
Q  748 gttttg 753  Q
    ||||||    
T  31846856 gttttg 31846851  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 657 - 707
Target Start/End: Original strand, 11392304 - 11392354
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  11392304 agcacttgggtgacattgtggttgatgaaattggcctaccacaatgtcaca 11392354  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 682 - 753
Target Start/End: Complemental strand, 6607525 - 6607455
Alignment:
Q  682 tgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    ||||||||  |||||| ||||||||| |||||||| ||| |||||||||||||||||||| || ||||||||    
T  6607525 tgacattgaccaaccataatgtcacatgtggcttt-cttctttttctttcacaagatttttttgttgttttg 6607455  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 657 - 706
Target Start/End: Original strand, 30023486 - 30023535
Alignment:
Q  657 agcacttgggtgacattgtggttgatgacattggtcaaccacaatgtcac 706  Q
    ||||||| ||||| |||||||||| |||||||||||||||| ||||||||    
T  30023486 agcacttaggtgatattgtggttggtgacattggtcaaccataatgtcac 30023535  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 707
Target Start/End: Complemental strand, 30023694 - 30023650
Alignment:
Q  663 tgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcaca 30023650  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 707
Target Start/End: Original strand, 39336297 - 39336336
Alignment:
Q  668 gacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  39336297 gacattgtggttgatgacatatgtcaaccacaatgtcaca 39336336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 707
Target Start/End: Original strand, 53261096 - 53261143
Alignment:
Q  660 acttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||| |||||||||||||||| ||||||||  ||||||||||||||||    
T  53261096 acttaggtgacattgtggttggtgacattgaccaaccacaatgtcaca 53261143  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 662 - 707
Target Start/End: Original strand, 54223561 - 54223606
Alignment:
Q  662 ttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||| |||||||||||||| ||||||||  ||||||||||||||||    
T  54223561 ttggatgacattgtggttggtgacattgaccaaccacaatgtcaca 54223606  T

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Target: scaffold1315 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 707
Target Start/End: Original strand, 1818 - 1866
Alignment:
Q  659 cacttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  1818 cacttgggtgacattgtggttggtgacattgatcaaccacaatatcaca 1866  T

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Target: scaffold1293 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 659 - 707
Target Start/End: Complemental strand, 253 - 205
Alignment:
Q  659 cacttgggtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    |||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  253 cacttgggtgacattgtggttggtgacattgatcaaccacaatatcaca 205  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 662 - 701
Target Start/End: Original strand, 33763466 - 33763505
Alignment:
Q  662 ttgggtgacattgtggttgatgacattggtcaaccacaat 701  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  33763466 ttgggtgacattgtggttggtgacattggtcaaccacaat 33763505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 682 - 753
Target Start/End: Original strand, 43465114 - 43465184
Alignment:
Q  682 tgacattggtcaaccacaatgtcacacgtggcttttcttatttttctttcacaagattttgttcttgttttg 753  Q
    ||||||||| |||||||||| ||||| |||||||| ||| ||||| |||||||||||||| || ||||||||    
T  43465114 tgacattggccaaccacaatatcacatgtggcttt-cttctttttttttcacaagatttttttgttgttttg 43465184  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 707
Target Start/End: Complemental strand, 45051384 - 45051343
Alignment:
Q  666 gtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||||||| ||||||||| | ||||||||||||||    
T  45051384 gtgacattgtggttggtgacattggccgaccacaatgtcaca 45051343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 724
Target Start/End: Complemental strand, 9415 - 9373
Alignment:
Q  682 tgacattggtcaaccacaatgtcacacgtggcttttcttattt 724  Q
    |||||||||||||||||||||| |||  |||||||||||||||    
T  9415 tgacattggtcaaccacaatgttacaactggcttttcttattt 9373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 707
Target Start/End: Original strand, 26512 - 26553
Alignment:
Q  666 gtgacattgtggttgatgacattggtcaaccacaatgtcaca 707  Q
    ||||||||||||||| ||||||||||||| |||||| |||||    
T  26512 gtgacattgtggttggtgacattggtcaaacacaatatcaca 26553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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