View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397-Insertion-6 (Length: 629)
Name: NF4397-Insertion-6
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397-Insertion-6 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 8 - 629
Target Start/End: Complemental strand, 20590782 - 20590165
Alignment:
| Q |
8 |
ggttttatgtagctagtagcttaatcaggaagggacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaagaaatggtttttat |
107 |
Q |
| |
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||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
20590782 |
ggttttatgtagccagtagcttaacgaggaaggaacaagaacatggaatgaatcatggttgaactctttgaaacagaacaatgaaagaaatggtttttat |
20590683 |
T |
|
| Q |
108 |
aatgatcaaaggagggtttgatgaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaaatgggtgtgtttga |
207 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20590682 |
aatgattaaaggagggtttgatgaaagggtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcatagaaaaatgggtgtgtttga |
20590583 |
T |
|
| Q |
208 |
catacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttcaaatatta |
307 |
Q |
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|||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
20590582 |
catacaaacatattgtaactaactcgtcaatttgaatttttgtttcgttgttctgacccttcattttgcaattggcttttcaaataaattttaaatatta |
20590483 |
T |
|
| Q |
308 |
tcannnnnnnnnnnnnacaaaacctataataatg-ttttttcttaataattgacatgaagtctgatatagaactcattttgtgattcctatgttatatat |
406 |
Q |
| |
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||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||| |
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| T |
20590482 |
tca-tatttcttttttacaaaacctataataatgttttttttttaacaattgacatgaagtctgatatagaactcattttgtaattcctgtgt----tat |
20590388 |
T |
|
| Q |
407 |
tggcttgtaattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttact |
506 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
20590387 |
tggcttgtaattaccaatgaatttgttttccgttgggggatgatgactcccactcttcttgatgtgtcgaccattcttaatttgtggacaagagtttact |
20590288 |
T |
|
| Q |
507 |
tttcggagtttcttcgcaagagctctattcctcgtggaataataaccgaacaagttttatgggaattgctagtttactacatgtagcttcaaataaaact |
606 |
Q |
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| T |
20590287 |
tttcggagtttcttcgcaagagctctattcctcgtggaataataaccaaacaagttttatgggaattgctagtttgctacctgtagcttcaactaaaact |
20590188 |
T |
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| Q |
607 |
tttgacgtgcatgtgcgcttata |
629 |
Q |
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|||||||||| | |||||||||| |
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| T |
20590187 |
tttgacgtgcctatgcgcttata |
20590165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 629
Target Start/End: Complemental strand, 20621656 - 20621045
Alignment:
| Q |
11 |
tttatgtagctagtagcttaatcaggaagggacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaagaaatggtttttataat |
110 |
Q |
| |
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|||||||||| | ||||||||| ||||||| ||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
20621656 |
tttatgtagccaatagcttaatgaggaaggaacaagaaaatggaatgaataatggtgaagctctttgaaacataacaatgaaagaaatggttttgataat |
20621557 |
T |
|
| Q |
111 |
gatcaaaggagggtttgatgaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaaatgggtgtgtttgacat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20621556 |
gatcaaaggagggtttgatgaaagagtttgtttttgtag-tttattgtgaaggaagctttgacattttaaatttcattgaaaaatgg--gtgtttgacat |
20621460 |
T |
|
| Q |
211 |
acaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttcaaatattatca |
310 |
Q |
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||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20621459 |
acaaacatattgtaactaactcatcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttcaaatattataa |
20621360 |
T |
|
| Q |
311 |
nnnnnnnnnnnnnacaaaacctataataatgttttttctt--aataattgacatgaagtctgatatagaactcattttgtgattcctatgttatatattg |
408 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
20621359 |
--ttttcttttttacaaaacctataataatgttttttatttcaataattgacatgaagtctgatatagaactcattttctgattcctatgt----tattg |
20621266 |
T |
|
| Q |
409 |
gcttgtaattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttacttt |
508 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |
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| T |
20621265 |
gcttttaattaccaatgaatttgttttccctt-ggggatgattactcccactcttcttgatgtgtcgaccattcttaatttgtggacaagagtttatttt |
20621167 |
T |
|
| Q |
509 |
tcggagtttcttcgcaagagctctattcctcgtggaataataaccgaacaag-ttttatgggaattgctagtttactacatgtagcttcaaataaaactt |
607 |
Q |
| |
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||| ||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||| |||| ||||||||||| |||||||| |
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| T |
20621166 |
tcgtagtttcttcgcaagagctccattcctcgtggaataataaccggaaaagtttttatgggaattgctagtttgctacctgtagcttcaactaaaactt |
20621067 |
T |
|
| Q |
608 |
ttgacgtgcatgtgcgcttata |
629 |
Q |
| |
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||||| ||| |||||||||||| |
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| T |
20621066 |
ttgacatgcctgtgcgcttata |
20621045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 8 - 512
Target Start/End: Original strand, 12057648 - 12058143
Alignment:
| Q |
8 |
ggttttatgtagctagtagcttaatcaggaagggacaagaacatggaatgaatcatggttgagctctttgaaacaaaacaatgaaagaaatggtttttat |
107 |
Q |
| |
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||||||||||||| | ||||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| || |
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| T |
12057648 |
ggttttatgtagccaatagcttaatgaggaaggaacaagaaaatggaatgaataatggttgagctctttgaaacagaacaataaaagaaatggttttgat |
12057747 |
T |
|
| Q |
108 |
aatgatcaaaggagggtttgatgaaagagtttgtttttgtagctttattgtgaaggaagctttgacattttaaatttcattgaaaaatgggtgtgtttga |
207 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12057748 |
aatgatcaaaggagggttagatgaaagagtttgtttttgtagctttaatgtaaaggaagctttgacattttaaatttcattgaaaaatgg--gtgtttga |
12057845 |
T |
|
| Q |
208 |
catacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaattggcttttcaaataaatttcaaatatta |
307 |
Q |
| |
|
|||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
12057846 |
catacaaacatattgtaactaactcatcaatttgaatttttgtttcgttgttctgacccttcattttgcaattggcttatcaaataaatttcaaatatta |
12057945 |
T |
|
| Q |
308 |
tcannnnnnnnnnnnnacaaaacctataataatgttttttcttaataattgacatgaagtctgatatagaactcattttgtgattcctatgttatatatt |
407 |
Q |
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| | |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12057946 |
taa--ttttcttttttacaaaacctataataatgttttttttcaataattgacatgaagtctgatatagaactcattttgtgattcctatgt----tatt |
12058039 |
T |
|
| Q |
408 |
ggcttgtaattaccaatgaatttgttttcccttgggggattatgactcccactcttcttgatgcgtcgaccattcttcatttgtggacaagagtttactt |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| || |||||||||| |||||||||||||| ||||||| |
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| T |
12058040 |
ggcttgtaattaccaatgaatttgttttcccttggggg-tgattactcccactcttcttgatgtgttgaccattcttaatttgtggacaagaatttactt |
12058138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 308
Target Start/End: Complemental strand, 20632311 - 20632184
Alignment:
| Q |
179 |
aaatttcattgaaaaatgggtgtgtttgacatacaaacatactctaaataactcgtcaatttgaatttttgtttcgttgttctgaccctttattttgcaa |
278 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| ||| | ||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
20632311 |
aaatttcattgaaaaatgggtgt--ttgacatacaaatatattgtaactaactcatcaatttgaatttttgtttcgtggttctgacccttcattttgcaa |
20632214 |
T |
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| Q |
279 |
ttggcttttcaaataaatttcaaatattat |
308 |
Q |
| |
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|||| ||||||||||||||||||||||||| |
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|
| T |
20632213 |
ttggtttttcaaataaatttcaaatattat |
20632184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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