View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397-Insertion-7 (Length: 466)
Name: NF4397-Insertion-7
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Complemental strand, 7195429 - 7194982
Alignment:
| Q |
8 |
atatcgcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccacaccgctttaaacctactccatataaaccaaagagac |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7195429 |
atatggcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccacaccgctttaaacctactccatataaaccaaagagac |
7195330 |
T |
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| Q |
108 |
caatcgaaaactatttaagaaaaattataatagacaacatgatcttctgccacggccaaatcggattcaaaatctaaggacatgcatggaacaatcttgt |
207 |
Q |
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| T |
7195329 |
caatcgaaaactatttaagaaaaattataatagacaacatgatcttctgccacggccaaatcggattcaaaatctaaggacatgcatggaacaatcttgt |
7195230 |
T |
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| Q |
208 |
atcctctacggtctctctagacaaacctctcggccattcaaataaatccaactatcaagatttgtttagatttgtttggagagacagcaaaggatacaag |
307 |
Q |
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| T |
7195229 |
atcctctacagtctctctagacaaacctctcggccattcaaattaatccaactatcaagattt----------gtttggagagacaggaaaggatacaag |
7195140 |
T |
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| Q |
308 |
tctcatgaaaacacattgaatggcaacctataatatagttgtgcattagagaaaatcagtaattaatttagcacctgcattttgggcaaccttttgccat |
407 |
Q |
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| T |
7195139 |
tctcatgaaaacacattgaatggcaa-ctataatatagttgtgcattagagaaaatcagtaattaatttagcacctgcattttgggcaaccttttgccat |
7195041 |
T |
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| Q |
408 |
tttccttctccatgaatgacaacatatttggagaggatatcatcttcttcacgagacca |
466 |
Q |
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| T |
7195040 |
tttccttctccatgaatgacaacatatttggagaggatatcatcttcttcacgagacca |
7194982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 9622004 - 9621946
Alignment:
| Q |
14 |
cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
72 |
Q |
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| T |
9622004 |
cctctctttatatctggtctaagataattcatccatctaagtctacaacttttcccaca |
9621946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 52071733 - 52071792
Alignment:
| Q |
13 |
gcctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
72 |
Q |
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| T |
52071733 |
gcctctcttaatatctggtcttagataattcaaccatctaagtctacaactttttccaca |
52071792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 48892615 - 48892673
Alignment:
| Q |
14 |
cctctctttatacctggtttgagataattcaaccatctttgtctacaactttttccaca |
72 |
Q |
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| T |
48892615 |
cctctctttatatctggtcttagatagttcatccatcttagtctgcaactttttccaca |
48892673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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