View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397-Insertion-9 (Length: 371)
Name: NF4397-Insertion-9
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397-Insertion-9 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 39951650 - 39952005
Alignment:
| Q |
8 |
taaccaaggctttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951650 |
taaccaaggctttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgt |
39951749 |
T |
|
| Q |
108 |
aaccgcaatagcaaagtattccaacatctccattgcatcgtcaccagtccatctccagaagtttccttctcggattttgtggctcaagtgtcctttaacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951750 |
aaccgcaatagcaaagtattccaacatctccattgcattgtcaccagtccatctccagaagtttccttctcggattttgtggctcaagtgtcctttaacc |
39951849 |
T |
|
| Q |
208 |
aaaacagtaaaggttatcacggcaaagactagtcctatttttccaataatggttgccactccattcagtttcacctgcaacggtgtttcatcgtctccac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39951850 |
aaaacagtaaaggttatcacggcaaagactagtcctatttttccaataatggttgccactccattcagtttcacctgcaaaggtgtttcatcgtctccac |
39951949 |
T |
|
| Q |
308 |
cttcgctaagagttgccatcaatttaccccattgagtcctcattccaacagtggta |
363 |
Q |
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| T |
39951950 |
cttcgctaagagttgccatcaatttaccccattgagtcctcattccaacagtggta |
39952005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 1624942 - 1624837
Alignment:
| Q |
20 |
tatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaaccgcaatagc |
119 |
Q |
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| T |
1624942 |
tatcattcattaattttttcattgcaaaagcaagactaagtgttacagctaacggtaatccttcaggaatcgcaacaactattatagttaccgcaatagc |
1624843 |
T |
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| Q |
120 |
aaagta |
125 |
Q |
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|||||| |
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| T |
1624842 |
aaagta |
1624837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 14589833 - 14589754
Alignment:
| Q |
19 |
ttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgac |
98 |
Q |
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| T |
14589833 |
ttatcattcatcaatttcttcatcgcgaacgcaagacttagtgtaactgctaaaggcaaaccctcaggaaccgcaacgac |
14589754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 1610557 - 1610500
Alignment:
| Q |
20 |
tatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaa |
77 |
Q |
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| T |
1610557 |
tatcattcattaattttttcattgcaaaagcaagactaagtgttacagctaacggtaa |
1610500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 363
Target Start/End: Complemental strand, 5419108 - 5418767
Alignment:
| Q |
22 |
tcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaaccgcaatagcaa |
121 |
Q |
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|||||||||||||| ||||| ||||||||||| |||||||| ||||||||||| | || || ||||||||||| || ||||| ||||| ||||| |||| |
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| T |
5419108 |
tcattcatcatttttttcatagcaaatgcaaggctcaatgtcacagctaatggaagcccttctggaacagcaacaacaacgatggtaactgcaatcgcaa |
5419009 |
T |
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| Q |
122 |
agtattccaacatctccattgcatcgtcaccagtccatctccagaagtttccttctcggattttgtggctcaagtgtcctttaaccaaaacagtaaaggt |
221 |
Q |
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|||| ||||||||||||| ||||| || ||| |||| ||||||||||| ||| | | | ||| |||||| |||||| || | ||||| ||| || |
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| T |
5419008 |
agtactccaacatctccaaagcatcatccccattccagttccagaagttttcttgttgaagtttaaggctcacaagtccttgcacaagaacagcaaaagt |
5418909 |
T |
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| Q |
222 |
tatcacggcaaagactagtcctatttttccaataatggttgccactccattcagtttcacctgcaacggtgtttcatcgtctccaccttcgctaagagtt |
321 |
Q |
| |
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| | |||||||| ||| |||||||| ||||||||||||||||||||||| ||||| || || || || |||||||| || |||||||| || ||||| |
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| T |
5418908 |
aacaatggcaaagaatagccctattttcccaataatggttgccactccattaagttttacttgtaatggggtttcatcatcaccaccttcactgagagta |
5418809 |
T |
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| Q |
322 |
gccatcaatttaccccattgagtcctcattccaacagtggta |
363 |
Q |
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| T |
5418808 |
gccatcaacttaccccattgagtcctcattccaactgtggta |
5418767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 47487597 - 47487257
Alignment:
| Q |
19 |
ttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaaccgcaatag |
118 |
Q |
| |
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|||||||||||||| || ||||| ||||| ||||| |||||||| |||||||| |||||||| || ||||||||||| || || |||||||| ||||||| |
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| T |
47487597 |
ttatcattcatcatctttttcatggcaaaagcaaggctcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagcaatag |
47487498 |
T |
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| Q |
119 |
caaagtattccaacatctccattgcatcgtcaccagtccatctccagaagtttccttctcggattttgtggctcaagtgtcctttaaccaaaacagtaaa |
218 |
Q |
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||||| |||||| || ||||||||||| ||||||| |||| |||| | |||||| | | ||| |||| || | |||| ||||| || | || |
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| T |
47487497 |
caaagaattccacaatttccattgcatcatcaccagaccatgtccattgggaaccttcttgcagcttgcggctaaatagcccttggaccaacactgagaa |
47487398 |
T |
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| Q |
219 |
ggttatcacggcaaagactagtcctatttttccaataatggttgccactccattcagtttcacctgcaacggtgtttcatcgtctccaccttcgctaaga |
318 |
Q |
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|| | || || || | || |||||||||||||||||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||||||| || ||| |
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| T |
47487397 |
agtcacaacagcgaaaaagaggcctatttttccaataatggtagccacaccattgagttttacctgcaagggagtttcatcatctccaccttcacttaga |
47487298 |
T |
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| Q |
319 |
gttgccatcaatttaccccattgagtcctcattccaacagt |
359 |
Q |
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| T |
47487297 |
gtagccattagtttaccccactgggttctcattccaacagt |
47487257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 4243444 - 4243527
Alignment:
| Q |
27 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaac |
110 |
Q |
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||||||||||||||||| | | || || ||||||| ||||||||||||||||||||||| | |||||| ||||| || ||||| |
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| T |
4243444 |
catcattttcttcattgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaac |
4243527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 6186500 - 6186561
Alignment:
| Q |
27 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaa |
88 |
Q |
| |
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||||||||||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| |
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| T |
6186500 |
catcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaa |
6186561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 227545 - 227624
Alignment:
| Q |
19 |
ttatcattcatcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgac |
98 |
Q |
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||||||||||||| ||||||||| || || |||||||| | ||| || ||||| || |||||||| ||||| |||||||| |
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| T |
227545 |
ttatcattcatcaatttcttcatcgcgaacgcaagacttagtgtaactgctaaaggcaaaccctcaggaaccgcaacgac |
227624 |
T |
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