View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4397_high_17 (Length: 227)
Name: NF4397_high_17
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_high_17 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 38242632 - 38242858
Alignment:
| Q |
1 |
tacatacctggattgtttcagctataaatccagcaacttttcctgaagtcccatagtcaatatggtcttggacatctttggcatagctatcggcatctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38242632 |
tacatacctggattgtttcagctataaatccagcaacttttcctgaagtcccatagtcaatatggtcttggacatctttggcatagctatcggcatctgc |
38242731 |
T |
|
| Q |
101 |
accaaagactccacggtatgggtctggattcataacatgatgaatttcaccctaaaagaatcaatgcgttgtcaagaataatttatggtttgttagtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38242732 |
accaaagactccacggtatgggtctggattcataacatgatgaatttcaccctaaaagaatcaatgtgttgtcaagaataatttatggtttgttagtttc |
38242831 |
T |
|
| Q |
201 |
ggcatcaaaaaatcaaacagaaaatca |
227 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
38242832 |
ggcatcaaaaaatcaaacagtaaatca |
38242858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University