View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4397_low_1 (Length: 683)

Name: NF4397_low_1
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4397_low_1
NF4397_low_1
[»] chr4 (4 HSPs)
chr4 (111-507)||(35202176-35202572)
chr4 (534-667)||(35202593-35202726)
chr4 (19-75)||(35202084-35202140)
chr4 (274-389)||(22483403-22483518)
[»] chr2 (2 HSPs)
chr2 (232-407)||(3945850-3946025)
chr2 (274-408)||(39741065-39741199)
[»] chr1 (2 HSPs)
chr1 (253-406)||(24878842-24878995)
chr1 (274-407)||(34645998-34646131)
[»] chr5 (1 HSPs)
chr5 (252-363)||(13481015-13481126)
[»] chr3 (2 HSPs)
chr3 (241-408)||(41895775-41895942)
chr3 (253-408)||(34976123-34976278)
[»] chr8 (2 HSPs)
chr8 (253-401)||(28437310-28437458)
chr8 (253-362)||(5211208-5211317)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 111 - 507
Target Start/End: Original strand, 35202176 - 35202572
Alignment:
Q  111 tatctaatttgtttttcttatcctattgtaggctgagatagatgatcataaggtttcaatggcttcttcaagtggtggtggaaatagggttatggaaaaa 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202176 tatctaatttttttttcttatcctattgtaggctgagatagatgatcttaaggtttcaatggcttcttcaagtggtggtggaaatagggttatggaaaaa 35202275  T
Q  211 ccaggtcaagagcttcttcaacagcaacaacaagctttaaggtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202276 ccaggtcaagagcttcttcaacagcaacaacaagctttaaggtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttat 35202375  T
Q  311 cacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaacg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202376 cacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaacg 35202475  T
Q  411 tcttaaacgaccaaatcactcctcttcaaatattgatactgctactgcttctccttcttcttcaactcctactagtgctaattcaaaccctccttct 507  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35202476 tcttaaacgaccaaatcactcttcttcaaatattgatactgctactgcttctccttcttcttcaactcctaatagtgctaattcaaaccctccttct 35202572  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 534 - 667
Target Start/End: Original strand, 35202593 - 35202726
Alignment:
Q  534 ccatagttttgatattgcttctacctcaaaccatatcaattctcttctttatggtaactcttcttgtcatgatgtgatgaactttccttttgcaacaagg 633  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202593 ccatagttttgatattgcttctacctcaaaccatatcaattctcttctttatggtaactcttcttgtcatgatgtgatgaactttccttttgcaacaagg 35202692  T
Q  634 ttcaattctacaagagtttcaagttcttcttctg 667  Q
    ||||||||||||||||||||||||||||||||||    
T  35202693 ttcaattctacaagagtttcaagttcttcttctg 35202726  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 35202084 - 35202140
Alignment:
Q  19 gttttcctcttggaacagaatatagccactgactaaaacatgcaccaccttaaaaca 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202084 gttttcctcttggaacagaatatagccactgactaaaacatgcaccaccttaaaaca 35202140  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 389
Target Start/End: Complemental strand, 22483518 - 22483403
Alignment:
Q  274 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 373  Q
    ||||| ||||| |||||||| || || || ||| | |||||||||||| | ||||||||  | ||||  ||||||||||| | |||||| ||||| || |    
T  22483518 aacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattggactaaaggtggtacactaagga 22483419  T
Q  374 acgttcctgttggtgg 389  Q
    | ||||||||||||||    
T  22483418 atgttcctgttggtgg 22483403  T

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Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 232 - 407
Target Start/End: Complemental strand, 3946025 - 3945850
Alignment:
Q  232 cagcaacaacaagctttaaggtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgca 331  Q
    ||||||||||||||| | | ||||||||||||||| ||||||||||| || || |||||||| || ||||| ||||| |||||||||||||| ||||| |    
T  3946025 cagcaacaacaagctctcaagtgtccacgttgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgta 3945926  T
Q  332 aagcctgtaaaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaa 407  Q
    |||| || ||| | ||||||||||||||||| || |||||||| ||||||||||||||||||| ||||| ||||||    
T  3945925 aagcttgcaaacgttattggacaagaggtggtactcttagaaatgttcctgttggtggtggttacagaagaaacaa 3945850  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 408
Target Start/End: Original strand, 39741065 - 39741199
Alignment:
Q  274 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 373  Q
    ||||| ||||||||||| || || ||||| ||| |  | || |||||| | ||||||||| | || | ||| |||||||| | |||||||||| | || |    
T  39741065 aacaccaaattctgttattacaacaactacagtcttactcagccaagatatttctgcaaatcttgcagaaggtattggaccaaaggtggaacattaagga 39741164  T
Q  374 acgttcctgttggtggtggttgcagaaaaaacaaa 408  Q
    | ||||||||||| ||||| |||||||||||||||    
T  39741165 atgttcctgttggaggtggatgcagaaaaaacaaa 39741199  T

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Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 253 - 406
Target Start/End: Original strand, 24878842 - 24878995
Alignment:
Q  253 tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga 352  Q
    |||||| | |||| ||| |||||||| |||||||| ||||| |||||||| || ||| | ||||||||| | || |||||||  || | ||| |||||||    
T  24878842 tgtccaagatgtggttcttcaaacacaaaattctgctactacaataactacagcttaactcaaccaagatatttttgcaaaggatgcagaaggtattgga 24878941  T
Q  353 caagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaaca 406  Q
    ||| ||||||| | || ||||| ||||||||||||||||| |||||||||||||    
T  24878942 caaaaggtggatccctcagaaatgttcctgttggtggtggctgcagaaaaaaca 24878995  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 274 - 407
Target Start/End: Original strand, 34645998 - 34646131
Alignment:
Q  274 aacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattggacaagaggtggaacacttagaa 373  Q
    ||||| ||||| |||||||| || |||||||||||  ||||||||||| | ||||||||| | |||| ||| ||||||||   ||||||| |  ||||||    
T  34645998 aacacaaaattttgttactacaacaactatagtttgacacaaccaagatatttctgcaaaacatgtagaaggtattggactcaaggtggatccattagaa 34646097  T
Q  374 acgttcctgttggtggtggttgcagaaaaaacaa 407  Q
    || ||||||||||||||||||  |||||||||||    
T  34646098 acattcctgttggtggtggttcaagaaaaaacaa 34646131  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 252 - 363
Target Start/End: Original strand, 13481015 - 13481126
Alignment:
Q  252 gtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgg 351  Q
    ||||||| | ||||| ||| | ||||| |||||||| ||||| || |||||||| ||| ||||||||||||| ||||||||| | |||| ||||||||||    
T  13481015 gtgtccaagatgtgactcacccaacacaaaattctgctactacaacaactatagcttaacacaaccaagacatttctgcaaaacatgtagaagatattgg 13481114  T
Q  352 acaagaggtgga 363  Q
    |||| |||||||    
T  13481115 acaaaaggtgga 13481126  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 408
Target Start/End: Original strand, 41895775 - 41895942
Alignment:
Q  241 caagctttaaggtgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgta 340  Q
    ||||||||||  |||||| | ||  ||||| | ||||| |||||||||||||| |||||||||||  | |||||||||||  |||| |||||| ||||||    
T  41895775 caagctttaaactgtccaaggtgcaattcaactaacacaaaattctgttactacaataactatagcctctcacaaccaaggtacttttgcaaaacctgta 41895874  T
Q  341 aaagatattggacaagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaa 408  Q
     ||| ||||||||   ||||||  |  | ||||| |||||||| ||||||||||  ||||||||||||    
T  41895875 gaaggtattggactgaaggtggttctttaagaaatgttcctgtaggtggtggttcaagaaaaaacaaa 41895942  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 408
Target Start/End: Complemental strand, 34976278 - 34976123
Alignment:
Q  253 tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga 352  Q
    |||||| | ||||||||| |  |||| |||||||| ||||| || || || ||| | || || |||||  ||||||||||  | |||| ||| |||||||    
T  34976278 tgtccaaggtgtgattcaactcacaccaaattctgctactacaacaattacagtctctctcagccaaggtacttctgcaagacttgtagaaggtattgga 34976179  T
Q  353 caagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaaaaacaaa 408  Q
    | | ||| ||||||||||| ||| | ||||||||||| || || ||||||||||||    
T  34976178 ccaaaggaggaacacttaggaacatccctgttggtggaggctgtagaaaaaacaaa 34976123  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 401
Target Start/End: Original strand, 28437310 - 28437458
Alignment:
Q  253 tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga 352  Q
    |||||| | ||||||||  ||||||| |||||||||||||| || ||||| ||| |  | ||||||||||| ||||||||| | || | |||||||||||    
T  28437310 tgtccaagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaacatgcagaagatattgga 28437409  T
Q  353 caagaggtggaacacttagaaacgttcctgttggtggtggttgcagaaa 401  Q
    |||  |||||| |  |  | ||||||||  ||||||||||||| |||||    
T  28437410 caaatggtggatcgttgcgtaacgttccgattggtggtggttgtagaaa 28437458  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 362
Target Start/End: Complemental strand, 5211317 - 5211208
Alignment:
Q  253 tgtccacgttgtgattcatcaaacactaaattctgttactataataactatagtttatcacaaccaagacacttctgcaaagcctgtaaaagatattgga 352  Q
    |||||||||||||| |||   ||||| |||||||| ||||| || ||||| | | | ||||||||| | || || ||||||  |||||||||||||||||    
T  5211317 tgtccacgttgtgaatcaaacaacacaaaattctgctactacaacaactacaatctctcacaaccacgccatttttgcaaaaactgtaaaagatattgga 5211218  T
Q  353 caagaggtgg 362  Q
    ||| ||||||    
T  5211217 caaaaggtgg 5211208  T

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