View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397_low_10 (Length: 314)
Name: NF4397_low_10
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 4152915 - 4152629
Alignment:
| Q |
13 |
attctactgtgccaatttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4152915 |
attctactgtgccaatttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaaga |
4152816 |
T |
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| Q |
113 |
aggaatgaacttgaagtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcctgattttaat |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4152815 |
aggaatgaacttaaagtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcctgattttaat |
4152716 |
T |
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| Q |
213 |
gtgagaacaaataatgctgatcaagataagtgtggagcagattgtttggcaaattgttcttgtttggcatatgcatatgatccttct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4152715 |
gtgagaacaaataatgctgatcaagataagtgtggagcagattgtttggcaaattgttcttgtttggcatatgcatatgatccttct |
4152629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 4123558 - 4123282
Alignment:
| Q |
20 |
tgtgccaatttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaagaaggaatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || |
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| T |
4123558 |
tgtgccaatttgtagttgttttgatgggtttgaggcaaagaattctgtggaatggagtttaggaaattggactaatggttgtgtgaggaaagagggattg |
4123459 |
T |
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| Q |
120 |
aacttgaagtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcctgattttaatgtgagaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||| |
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| T |
4123458 |
aacttgaagtgtgagatggtgaagaatggatcaactgtagttaagcaagatggatttaaggtgtatcataatatgaaagttcctgattttgctgagagat |
4123359 |
T |
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| Q |
220 |
caaataatgctgatcaagataagtgtggagcagattgtttggcaaattgttcttgtttggcatatgcatatgatccttct |
299 |
Q |
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| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123358 |
ta---aatgttgatatagataagtgtggagaagattgtttggcaaattgttcttgtttggcatatgcatatgatccttct |
4123282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 4144912 - 4144629
Alignment:
| Q |
13 |
attctactgtgccaatttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaaga |
112 |
Q |
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|||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| | ||| |
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| T |
4144912 |
attctagtgtaccaatttgtagttgttttgatgggtttcagccaaagaattcggtggagtggagtttaggaaattggactaatggttgtgtgagaacaga |
4144813 |
T |
|
| Q |
113 |
aggaatgaacttgaagtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcctgattttaat |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||| |||| |||| ||||||||||||||||||||||||||||| |
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| T |
4144812 |
aggattgaacttgaagtgtgagatggtgaagaatggatcaaatctagtgaaacaagatgcatttttggtgcatcataatatgaaacctcctgattttaat |
4144713 |
T |
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| Q |
213 |
gtgagaacaaataatgctgatcaagataagtgtggagcagattgtttggcaaattgttcttgtttggcatatgcatatgatccttct |
299 |
Q |
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| |||| || || | |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4144712 |
gagagatca---gctggtaatcaagataaatgtggaacagattgtttggcaaattgtacttgtttggcatatgcatatgatccttct |
4144629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 297
Target Start/End: Complemental strand, 4163251 - 4162984
Alignment:
| Q |
27 |
atttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaagaaggaatgaacttga |
126 |
Q |
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||||||||||||||| | ||||||||||||||||||| ||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163251 |
atttgtagttgttttaaagggtttgagccaaagaatttggtggagtggagttcaaggaattggactaatggttgtgtgaggaaagaaggaatgaacttga |
4163152 |
T |
|
| Q |
127 |
agtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcctgattttaatgtgagaacaaataa |
226 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||| |||| |||||||||||||||| || |||| || | |
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| T |
4163151 |
agtgtgagatggtgaagaatggatcaagcgtagttaaacaagataaatttttggtgcatcccaatacgaaacctcctgattttgctgagagatca---ga |
4163055 |
T |
|
| Q |
227 |
tgctgatcaagataagtgtggagcagattgtttggcaaattgttcttgtttggcatatgcatatgatcctt |
297 |
Q |
| |
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|| | || |||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4163054 |
tgttagtcgagataagtgtagaacagattgtttggcaaattgttcttgtttggcttatgcatatgatcctt |
4162984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 27 - 294
Target Start/End: Complemental strand, 4134093 - 4133829
Alignment:
| Q |
27 |
atttgtagttgttttgatgggtttgagccaaagaattctgtggaatggagtttaggcaattggactaatggttgtgtgaggaaagaaggaatgaacttga |
126 |
Q |
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||||||||||||||| | ||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||||| || |||||||||||||| |
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| T |
4134093 |
atttgtagttgttttaaagggtttgagccaaagaatttggtggaatggagttcaaggaattggactaatggttgtgtgaggacagcaggaatgaacttga |
4133994 |
T |
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| Q |
127 |
agtgtgagatggtgaagaatggatcaagtatagttaaacaagatggatttaaggtgtatcataatatgaaacctcctgattttaatgtgagaacaaataa |
226 |
Q |
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||||||||||| |||||| ||||||| | | ||||||||||||| ||| |||| ||| ||||||||| |||||||||||||| |||| || |
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| T |
4133993 |
agtgtgagatgttgaagaccggatcaaatgaatttaaacaagatggttttttggtgaatcggaatatgaaagttcctgattttaatgagagatca---gc |
4133897 |
T |
|
| Q |
227 |
tgctgatcaagataagtgtggagcagattgtttggcaaattgttcttgtttggcatatgcatatgatc |
294 |
Q |
| |
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|| | |||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4133896 |
tggtaatcaagataaatgtagaacagattgtttggtaaattgttcttgtttggcatatgcatatgatc |
4133829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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