View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397_low_13 (Length: 256)
Name: NF4397_low_13
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 9567968 - 9567724
Alignment:
| Q |
12 |
atcatcagggagtgcaatttataaagccttgaaatgtgaagaaccaacaagcatagagttgataagtgctatgcacattttgtatcagatttgcccatat |
111 |
Q |
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| T |
9567968 |
atcatcagggagtgcaatttataaagccttgaaatgtgaagaaccaacaagcatagagttgatgagtgctatgcacattttgtatcagatttgcccatat |
9567869 |
T |
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| Q |
112 |
tttcagtttgcttatatatcatccaatgctgtcatttgtgaagaaatgaaaaatgaatcaagaattcacataattgacttccaaattgcacaaggatcac |
211 |
Q |
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| T |
9567868 |
tttcagtttgcttatatatcatccaatgctgtcatttgtgaagaaatgcaaaatgaatcaagaattcacataattgacttccaaattgcacaaggatcac |
9567769 |
T |
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| Q |
212 |
agtggatgttacttttgcatgctctcaagcataaacccggcggac |
256 |
Q |
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| T |
9567768 |
agtggatgttacttttgcatgctctcaagcataaacccggcggac |
9567724 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 55913786 - 55913614
Alignment:
| Q |
40 |
ttgaaatgtgaagaaccaacaagcatagagttgataagtgctatgcacattttgtatcagatttgcccatattttcagtttgcttatatatcatccaatg |
139 |
Q |
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| T |
55913786 |
ttgaaatgtgaacaaccaacgagcaaagagctaatgacttacatgcacatgctgtatcagatttgtccatattttaagtttgcatacatatctgcaaatg |
55913687 |
T |
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| Q |
140 |
ctgtcatttgtgaagaaatgaaaaatgaatcaagaattcacataattgacttccaaattgcacaaggatcaca |
212 |
Q |
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| T |
55913686 |
ctgttatttctgaagcaatggcaaatgaatccaggattcatataattgatttccaaatcgcacagggaacaca |
55913614 |
T |
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