View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397_low_14 (Length: 253)
Name: NF4397_low_14
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 290465 - 290229
Alignment:
| Q |
1 |
aaggtctgaaccttcaggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtgtttgccatggaactaaattggtagat |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |||||||||| |
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| T |
290465 |
aaggtttgaaccttcaggggtcttgaaagtggtcttgtaccaagtcattggtccttctatagaaacattacgtgtttgccatggaactacattggtagat |
290366 |
T |
|
| Q |
101 |
ttgggatcatagaactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagttgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
290365 |
ttgggatcatagaactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtttggatattcagttgaaa |
290266 |
T |
|
| Q |
201 |
tgagtttcgcaggaccgccaacaataccagtttcttt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
290265 |
tgagtttcgcaggaccgccaacaataccagtttcttt |
290229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 280007 - 279785
Alignment:
| Q |
14 |
tcaggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtgtttgccatggaactaaattggtagatttgggatcataga |
113 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||| |||| ||||| | |||| | |||||||||||||| |
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| T |
280007 |
tcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcataga |
279908 |
T |
|
| Q |
114 |
actttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagttgaaatgagtttcgcagg |
213 |
Q |
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| T |
279907 |
actttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagg |
279808 |
T |
|
| Q |
214 |
accgccaacaataccagtttctt |
236 |
Q |
| |
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||| |||||||| |||||||||| |
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| T |
279807 |
acccccaacaatgccagtttctt |
279785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 24532189 - 24531956
Alignment:
| Q |
1 |
aaggtctgaaccttcaggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtgtttgccatggaactaaattggtagat |
100 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| ||| |||| |
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| T |
24532189 |
aaggtttgacccttcaggggtcttgaaagtggtcttgtaccaagtcattggtactcctatagaaacattacgtggtatccatggaactccatt---agat |
24532093 |
T |
|
| Q |
101 |
ttgggatcatagaactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagttgaaa |
200 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24532092 |
ttgggatcatagaactttctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaa |
24531993 |
T |
|
| Q |
201 |
tgagtttcgcaggaccgccaacaataccagtttcttt |
237 |
Q |
| |
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||||||| || |||| |||||||||||||||||||| |
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|
| T |
24531992 |
tgagtttaacatgacccccaacaataccagtttcttt |
24531956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 24525517 - 24525283
Alignment:
| Q |
1 |
aaggtctgaaccttcaggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtgtttgccatggaactaaattggtagat |
100 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||| |
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| T |
24525517 |
aaggtttgaccctttaggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccatt---agat |
24525421 |
T |
|
| Q |
101 |
ttgggatcatagaactttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcagttgaaa |
200 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24525420 |
ctgggatcttagaactttctagccataccattcatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaa |
24525321 |
T |
|
| Q |
201 |
tgagtttcgcagga-ccgccaacaataccagtttcttt |
237 |
Q |
| |
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|||||||| || || || |||||||||||||||||||| |
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| T |
24525320 |
tgagtttcacatgaccccccaacaataccagtttcttt |
24525283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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