View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4397_low_16 (Length: 251)
Name: NF4397_low_16
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_16 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 2433059 - 2432836
Alignment:
| Q |
19 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2433059 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttggcagcatccacaatttcttcatatgtagcatcctctctt |
2432960 |
T |
|
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432959 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
2432860 |
T |
|
| Q |
219 |
tagcaactccatcaagaataatct |
242 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2432859 |
tagcaactccatcaagaagaatct |
2432836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 2572414 - 2572637
Alignment:
| Q |
19 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2572414 |
aacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcatcctctctt |
2572513 |
T |
|
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2572514 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
2572613 |
T |
|
| Q |
219 |
tagcaactccatcaagaataatct |
242 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2572614 |
tagcaactccatcaagaagaatct |
2572637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 2620334 - 2620111
Alignment:
| Q |
19 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2620334 |
aacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcatcctctctt |
2620235 |
T |
|
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620234 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
2620135 |
T |
|
| Q |
219 |
tagcaactccatcaagaataatct |
242 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2620134 |
tagcaactccatcaagaagaatct |
2620111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 2448926 - 2448703
Alignment:
| Q |
19 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
2448926 |
aacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaacatcttcatatgtagcatcctctctt |
2448827 |
T |
|
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2448826 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
2448727 |
T |
|
| Q |
219 |
tagcaactccatcaagaataatct |
242 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2448726 |
tagcaactccatcaagaagaatct |
2448703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 2677250 - 2677473
Alignment:
| Q |
19 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
2677250 |
aacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagctttagcagcatccacgatttcttcatatgtagcatcctctctt |
2677349 |
T |
|
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2677350 |
ccaaaaagtatattctccataatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
2677449 |
T |
|
| Q |
219 |
tagcaactccatcaagaataatct |
242 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2677450 |
tagcaactccatcaagaagaatct |
2677473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 2586644 - 2586421
Alignment:
| Q |
19 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
2586644 |
aacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagctttagcagcatccacaacatcttcaaatgtagcatcctctctt |
2586545 |
T |
|
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2586544 |
ccaaaaagtatattctccttgatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
2586445 |
T |
|
| Q |
219 |
tagcaactccatcaagaataatct |
242 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2586444 |
tagcaactccatcaagaagaatct |
2586421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 2599992 - 2600215
Alignment:
| Q |
19 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctctt |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
2599992 |
aacctgagtatcatatacttgtggcaacaatgaaatgaaattatgagcattagaagttttagcagcattcacaatttcttcatatgtagcatcctctctt |
2600091 |
T |
|
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600092 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
2600191 |
T |
|
| Q |
219 |
tagcaactccatcaagaataatct |
242 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
2600192 |
tagcaactccatcaagaagaatct |
2600215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 2644812 - 2645035
Alignment:
| Q |
19 |
aacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctctctt |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
2644812 |
aacctgcgtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaaactttagcagcatctacaacatcttcatatgtagcatcctctctt |
2644911 |
T |
|
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
2644912 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgacttactaaacccatttgagacctaagccactgaagttgcaacttatgaa |
2645011 |
T |
|
| Q |
219 |
tagcaactccatcaagaataatct |
242 |
Q |
| |
|
| |||||||||||||||| ||||| |
|
|
| T |
2645012 |
tggcaactccatcaagaagaatct |
2645035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 17872688 - 17872804
Alignment:
| Q |
119 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgactcactaaacccatttgtgacctaagccacttaagttgcaacttatgaa |
218 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||| |||||||||||| |||| ||||| ||| ||| |
|
|
| T |
17872688 |
ccaaaaattatattctctttaatgcttgttgcaaataaagcaggttcttgactaaccaaccccatcattgacctaagccatttaatctgcaagttacgaa |
17872787 |
T |
|
| Q |
219 |
tagcaactccatcaaga |
235 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
17872788 |
tagctactccatcaaga |
17872804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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