View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397_low_17 (Length: 250)
Name: NF4397_low_17
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 19754600 - 19754367
Alignment:
| Q |
17 |
tggaggagtacgaccttgccatttccgaatatgaaaaggcaattcaagaattgaagtcgaacaagaaatcccttttggaaaaagatgaacggcttaaaaa |
116 |
Q |
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| T |
19754600 |
tggaggagtacgaccttgccatttccgaatatgaaaaggcaattcaagaattgaagtcgaacaagaaatcccttttggaaaaagatgaacggcttaaaaa |
19754501 |
T |
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| Q |
117 |
ggaagcaaatcttaccatcaggaaggtcgaaatttcaaagcggaaaaatgctgaaatagcaaaactaaaaaccgaaggagaccttcttgatgctaaattg |
216 |
Q |
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| T |
19754500 |
ggaagcaaatcttaccatcaggaaggtcgaagattcaaagcggaaaaatgctgaaatagcaaaactaaaaactgaaggagaccttcttgatgctaaattg |
19754401 |
T |
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| Q |
217 |
gctcattcgaagactaatctcaacaagctcaaaa |
250 |
Q |
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| T |
19754400 |
gctcattcgaagactaatctcaacaagctcaaaa |
19754367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 22526691 - 22526453
Alignment:
| Q |
9 |
gaagaatatggaggagtacgaccttgccatttccgaatatgaaaaggcaattcaagaattgaagtcgaacaagaaatcccttttggaaaaagatgaacgg |
108 |
Q |
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|||||| ||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||| | |
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| T |
22526691 |
gaagaaaatggaagagtacgaccttgccattttcgaacatgaaaaggcaattcaaaaattgaagtcgaacaaaaaatccctcttggaaaaatatgaaagt |
22526592 |
T |
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| Q |
109 |
cttaaaaaggaagcaaatcttaccatcaggaaggtcgaaatttcaaagcggaaaaatgctgaaatagcaaaactaaaaaccgaaggagaccttcttgatg |
208 |
Q |
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|||| ||||||||| |||||||||||| |||||||||| | | || ||| ||||||||| |||||||| | | | |||||| |||||||||||| |
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| T |
22526591 |
cttaggaaggaagcatatcttaccatcaagaaggtcgaagatgccaaacggctaaatgctgaggtagcaaaattgaccagcgaaggggaccttcttgata |
22526492 |
T |
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| Q |
209 |
ctaaattggctcattcgaagactaatctcaacaagctca |
247 |
Q |
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| T |
22526491 |
acaagctagatcattcgaaggcaaatctcaacaagctca |
22526453 |
T |
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