View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397_low_3 (Length: 539)
Name: NF4397_low_3
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 285 - 531
Target Start/End: Original strand, 34180754 - 34181007
Alignment:
| Q |
285 |
catcttattataactgtcttaatttatacttttctgttttgaaattatcgtcacttcatattttagactacctataaaaagtaaattattttatattata |
384 |
Q |
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| T |
34180754 |
catcttattatatctgtcttaatttatatttttctgttttgaaataatggtcactttatattttagactacctataaaaagtaaattattttctattata |
34180853 |
T |
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| Q |
385 |
agagcgtttc-------aatcaatgaaacttaatttactcaacatttaaatcaacacaattaatcattcttaagaatcacacacaactcaaatgaagcac |
477 |
Q |
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| T |
34180854 |
aaagcgtttcaaatttcaatcaatgaaatttaatttactcaacatttgaatcaacacaattaatcattcttaggaatcacacacaactcaaatgaaacac |
34180953 |
T |
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| Q |
478 |
aaaagtgagtgttttacttttaatcacactatatcaacgcctattaagtataat |
531 |
Q |
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| T |
34180954 |
aaaagtgagtgttttacttttaatcacactatatcaacgcctattaagtttaat |
34181007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 34180389 - 34180513
Alignment:
| Q |
17 |
agtttataccaaaccattttcttcttattttttattaaacgagacatgacctgtgttacaaaagaggcacaaccttggtccaaaattaacaaacagacta |
116 |
Q |
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| T |
34180389 |
agtttataccaaaccattgccttcttattttttattaaacgatacatgacctgtgctacaaaagaggcacaaccttagtccaaaattaacaaacagacta |
34180488 |
T |
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| Q |
117 |
caccaagtaaatggacaacgtagta |
141 |
Q |
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| T |
34180489 |
caccaagtaaatggacaacgtagta |
34180513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 34180586 - 34180644
Alignment:
| Q |
213 |
agacaatgcattaatttgtacatcccatcttacatacatttcacactaatatatatttt |
271 |
Q |
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| T |
34180586 |
agacaatgcattaatttctacatcccatcttacatacatttcacactaatatatttttt |
34180644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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