View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4397_low_4 (Length: 514)

Name: NF4397_low_4
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4397_low_4
NF4397_low_4
[»] chr3 (4 HSPs)
chr3 (18-307)||(49570156-49570454)
chr3 (380-502)||(49570526-49570648)
chr3 (92-137)||(7829920-7829965)
chr3 (92-137)||(9027380-9027425)
[»] chr5 (3 HSPs)
chr5 (447-502)||(5356416-5356472)
chr5 (445-502)||(5359379-5359440)
chr5 (446-485)||(40292898-40292938)
[»] chr8 (4 HSPs)
chr8 (103-138)||(32232380-32232415)
chr8 (107-141)||(12959309-12959343)
chr8 (92-137)||(6038267-6038312)
chr8 (102-138)||(1230663-1230699)
[»] chr1 (1 HSPs)
chr1 (103-137)||(35632923-35632957)
[»] scaffold0350 (1 HSPs)
scaffold0350 (92-137)||(1272-1317)
[»] chr6 (1 HSPs)
chr6 (92-137)||(4826314-4826359)
[»] scaffold0161 (1 HSPs)
scaffold0161 (103-135)||(26724-26756)
[»] chr7 (2 HSPs)
chr7 (99-135)||(23374629-23374665)
chr7 (103-139)||(25251532-25251568)
[»] chr2 (1 HSPs)
chr2 (102-167)||(28825097-28825157)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 9e-96; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 49570156 - 49570454
Alignment:
Q  18 gtatgaatgaatggtttacttgttgaagtgta-ccaacacatttttcaattgcattatacnnnnnnnnnnnnnnnggtggccggattttgaacttcaaac 116  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||               |||||||||||||||||||||||||    
T  49570156 gtatgaatgaatggtttacttgttgaagtgtaaccaacacatttttcaattgcattatacttttttttttgt---ggtggccggattttgaacttcaaac 49570252  T
Q  117 cttatatatattatgcattgtttctttctgtcaattgagttaagcttacgaagatcgattgcattataccgacccaatatctaaagttaggtgccagtta 216  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  49570253 cttatatatattatgcattgtttctttctgctaattgagttaagcttacgaagattgattgcattatactgacccaatatctaaagttaggtgccagtca 49570352  T
Q  217 aaaaatgtataaaaagtttggtgaactactaaactatcaaatttaacatca-----------acaaaatcacacataaagagggaacaagtcatggtctt 305  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||    
T  49570353 aaaaatgtataagaagtttggtgaactactgaactatcaaatttaacatcaacaaaatggagacaaaatcacacataaagagggaacaagtcatggtctt 49570452  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 380 - 502
Target Start/End: Original strand, 49570526 - 49570648
Alignment:
Q  380 aatcactggaatgtttcatcccctccannnnnnnggcgaccacggtggtagctctgaagtttaatatgggtgcagatcctctccatttcctaagaaattg 479  Q
    ||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  49570526 aatcactggaatgtttcatcccctcaatttttttggcgaccacggtggtagctctgaagtttactatgggtgcaaatcctctccatttcctaagaaattg 49570625  T
Q  480 agatcttcaagttggttgagtat 502  Q
    |||||||||||||||||||||||    
T  49570626 agatcttcaagttggttgagtat 49570648  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 7829965 - 7829920
Alignment:
Q  92 ggtggccggattttgaacttcaaaccttatatatattatgcattgt 137  Q
    ||||| ||||||| |||||||| |||||| ||||||||||||||||    
T  7829965 ggtggtcggatttcgaacttcagaccttacatatattatgcattgt 7829920  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 9027380 - 9027425
Alignment:
Q  92 ggtggccggattttgaacttcaaaccttatatatattatgcattgt 137  Q
    |||||||| | ||| ||| |||||||||||||||||||||||||||    
T  9027380 ggtggccgaagtttaaacctcaaaccttatatatattatgcattgt 9027425  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 502
Target Start/End: Original strand, 5356416 - 5356472
Alignment:
Q  447 gggtgcagatcctctccatttcct-aagaaattgagatcttcaagttggttgagtat 502  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  5356416 gggtgcagatcctctccatttccttaagaaattgagatcttcaagtttgttgagtat 5356472  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 5359440 - 5359379
Alignment:
Q  445 atgggtgcagatcctctccatttc----ctaagaaattgagatcttcaagttggttgagtat 502  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||| ||| |||||    
T  5359440 atgggtgcagatcctctccatttcttttctaagaaattgagatcttcaagtttgtttagtat 5359379  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 485
Target Start/End: Complemental strand, 40292938 - 40292898
Alignment:
Q  446 tgggtgcagatcctctccatttcctaag-aaattgagatct 485  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  40292938 tgggtgcagatcctctccatttccttagaaaattgagatct 40292898  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 138
Target Start/End: Original strand, 32232380 - 32232415
Alignment:
Q  103 tttgaacttcaaaccttatatatattatgcattgtt 138  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32232380 tttgaacttcaaatcttatatatattatgcattgtt 32232415  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 12959343 - 12959309
Alignment:
Q  107 aacttcaaaccttatatatattatgcattgtttct 141  Q
    |||||||||||||| ||||||||||||||||||||    
T  12959343 aacttcaaaccttacatatattatgcattgtttct 12959309  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 6038267 - 6038312
Alignment:
Q  92 ggtggccggattttgaacttcaaaccttatatatattatgcattgt 137  Q
    |||||||||| |||||||| || |||||| ||||||||||||||||    
T  6038267 ggtggccggagtttgaactccagaccttacatatattatgcattgt 6038312  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 1230663 - 1230699
Alignment:
Q  102 ttttgaacttcaaaccttatatatattatgcattgtt 138  Q
    |||||||| |||||||||| |||||||||||||||||    
T  1230663 ttttgaacctcaaaccttacatatattatgcattgtt 1230699  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 35632957 - 35632923
Alignment:
Q  103 tttgaacttcaaaccttatatatattatgcattgt 137  Q
    ||||||| |||||||||||||||||||||||||||    
T  35632957 tttgaacctcaaaccttatatatattatgcattgt 35632923  T

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Target: scaffold0350 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 1317 - 1272
Alignment:
Q  92 ggtggccggattttgaacttcaaaccttatatatattatgcattgt 137  Q
    |||||||||| |||||||| || |||||| ||||||||||||||||    
T  1317 ggtggccggagtttgaactccagaccttacatatattatgcattgt 1272  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 4826359 - 4826314
Alignment:
Q  92 ggtggccggattttgaacttcaaaccttatatatattatgcattgt 137  Q
    |||||||||| ||||||| || ||||||| ||||||||||||||||    
T  4826359 ggtggccggagtttgaacctcgaaccttacatatattatgcattgt 4826314  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 26756 - 26724
Alignment:
Q  103 tttgaacttcaaaccttatatatattatgcatt 135  Q
    ||||||||| |||||||||||||||||||||||    
T  26756 tttgaactttaaaccttatatatattatgcatt 26724  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 23374629 - 23374665
Alignment:
Q  99 ggattttgaacttcaaaccttatatatattatgcatt 135  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  23374629 ggattttgaactccaaaccttacatatattatgcatt 23374665  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 25251568 - 25251532
Alignment:
Q  103 tttgaacttcaaaccttatatatattatgcattgttt 139  Q
    |||||||  ||||||||||||||||||||||||||||    
T  25251568 tttgaaccccaaaccttatatatattatgcattgttt 25251532  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 28825097 - 28825157
Alignment:
Q  102 ttttgaacttcaaaccttatatatattatgcattgtttctttctgtcaattgagttaagcttacga 167  Q
    |||||||||| ||||||||||||||||| ||||||    ||||| |||||||||||||||| ||||    
T  28825097 ttttgaactt-aaaccttatatatattaagcattg----tttctatcaattgagttaagctcacga 28825157  T

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