View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397_low_6 (Length: 365)
Name: NF4397_low_6
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_6 |
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| [»] chr6 (13 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 171 - 365
Target Start/End: Complemental strand, 2586686 - 2586492
Alignment:
| Q |
171 |
tcatatttggtttatagcatattgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagct |
270 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
2586686 |
tcatatttggtttatagcatatttacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagct |
2586587 |
T |
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| Q |
271 |
ttagcagcatccacaatttcttcatatgtagcattctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
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|||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2586586 |
ttagcagcatccacaacatcttcaaatgtagcatcctctcttccaaaaagtatattctccttgatgcttgttgcaaacaaagcaggttcttgact |
2586492 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 196 - 365
Target Start/End: Complemental strand, 2620351 - 2620182
Alignment:
| Q |
196 |
caaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2620351 |
caaaagcaatcaacactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcat |
2620252 |
T |
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| Q |
296 |
atgtagcattctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2620251 |
atgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
2620182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 193 - 365
Target Start/End: Complemental strand, 2433079 - 2432907
Alignment:
| Q |
193 |
tgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttctt |
292 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2433079 |
tgacaaaagtaattaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttggcagcatccacaatttctt |
2432980 |
T |
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| Q |
293 |
catatgtagcattctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2432979 |
catatgtagcatcctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
2432907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 209 - 365
Target Start/End: Original strand, 2572410 - 2572566
Alignment:
| Q |
209 |
cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
308 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2572410 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcatcctc |
2572509 |
T |
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| Q |
309 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572510 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
2572566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 193 - 365
Target Start/End: Original strand, 2677230 - 2677402
Alignment:
| Q |
193 |
tgacaaaagcaatcaacactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttctt |
292 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
2677230 |
tgacaaaagtaattaacactaacctgagtatcatatccttgtggcaacattgaaatgaaattatgagcattagaagctttagcagcatccacgatttctt |
2677329 |
T |
|
| Q |
293 |
catatgtagcattctctcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2677330 |
catatgtagcatcctctcttccaaaaagtatattctccataatgcttgttgcaaacaaagcaggttcttgact |
2677402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 209 - 365
Target Start/End: Complemental strand, 2448930 - 2448774
Alignment:
| Q |
209 |
cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
308 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
2448930 |
cactaacctgagtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaagctttagcagcatccacaacatcttcatatgtagcatcctc |
2448831 |
T |
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| Q |
309 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2448830 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
2448774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 2599989 - 2600144
Alignment:
| Q |
210 |
actaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctct |
309 |
Q |
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||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
2599989 |
actaacctgagtatcatatacttgtggcaacaatgaaatgaaattatgagcattagaagttttagcagcattcacaatttcttcatatgtagcatcctct |
2600088 |
T |
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| Q |
310 |
cttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2600089 |
cttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
2600144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 209 - 365
Target Start/End: Original strand, 2644808 - 2644964
Alignment:
| Q |
209 |
cactaacctgagtatcatatccttgtggcaacattgatatgaaattatgagcattggaagctttagcagcatccacaatttcttcatatgtagcattctc |
308 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||| |
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| T |
2644808 |
cactaacctgcgtatcatatccttgtggcaacaatgaaatgaaattatgagcattggaaactttagcagcatctacaacatcttcatatgtagcatcctc |
2644907 |
T |
|
| Q |
309 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2644908 |
tcttccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
2644964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 2677134 - 2677266
Alignment:
| Q |
16 |
atttggttaatagcatattaatgacaaaagcaattagcactaacccaagaatcatatcttacgaaaattctattatattttattaatagcataatgtgac |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2677134 |
atttggttaatagcatattaatgacaaaagcaattagcactaacccaagtatcatatcttacgaaaattctattatatttgattaatagcataatgtgac |
2677233 |
T |
|
| Q |
116 |
aaaagtaattaacactaacctgagtattatatc |
148 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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| T |
2677234 |
aaaagtaattaacactaacctgagtatcatatc |
2677266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 2433182 - 2433043
Alignment:
| Q |
16 |
atttggttaatagcatattaatgacaaaagcaattagcactaacccaagaatcatatcttacgaaaattctattatattttatt-------aatagcata |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||| || ||||||||| |
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| T |
2433182 |
atttggttaatagcatattaatgacaaaagcaattagcactaacccaagtatcaaatcctaggaaaattctattatatttggttaatactgaatagcata |
2433083 |
T |
|
| Q |
109 |
atgtgacaaaagtaattaacactaacctgagtattatatc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
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| T |
2433082 |
atgtgacaaaagtaattaacactaacctgagtatcatatc |
2433043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 2677094 - 2677191
Alignment:
| Q |
136 |
tgagtattatatcttaggaaaattccact-aattactcatatttggtttatagcatat---tgacaaaagcaatcaacactaacctgagtatcatatc |
229 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| | |||||||| ||||||||||| |
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| T |
2677094 |
tgagtatcatatctaaggaaaattccacttaattactcatatttggttaatagcatattaatgacaaaagcaattagcactaacccaagtatcatatc |
2677191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 2588452 - 2588400
Alignment:
| Q |
130 |
ctaacctgagtattatatcttaggaaaattccactaattactcatatttggtt |
182 |
Q |
| |
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||||| ||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
2588452 |
ctaacatgagtatcatatcctaggaaaattccagtaattactcatatttggtt |
2588400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 2433227 - 2433123
Alignment:
| Q |
130 |
ctaacctgagtattatatcttaggaaaattccac-taattactcatatttggtttatagcatat---tgacaaaagcaatcaacactaacctgagtatca |
225 |
Q |
| |
|
||||||| ||||| ||||| ||||||| |||||| ||| ||||||||||||||| ||||||||| ||||||||||||| | |||||||| ||||||| |
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| T |
2433227 |
ctaacctaagtatcatatcctaggaaa-ttccacataactactcatatttggttaatagcatattaatgacaaaagcaattagcactaacccaagtatca |
2433129 |
T |
|
| Q |
226 |
tatcct |
231 |
Q |
| |
|
||||| |
|
|
| T |
2433128 |
aatcct |
2433123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 17872688 - 17872740
Alignment:
| Q |
313 |
ccaaaaagtatattctccttaatgcttgttgcaaacaaagcaggttcttgact |
365 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
17872688 |
ccaaaaattatattctctttaatgcttgttgcaaataaagcaggttcttgact |
17872740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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