View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4397_low_7 (Length: 360)

Name: NF4397_low_7
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4397_low_7
NF4397_low_7
[»] chr5 (5 HSPs)
chr5 (8-345)||(5775475-5775796)
chr5 (186-341)||(5768826-5768981)
chr5 (143-179)||(40197703-40197739)
chr5 (149-182)||(39074999-39075032)
chr5 (144-178)||(3247769-3247803)
[»] chr1 (5 HSPs)
chr1 (141-182)||(15646121-15646162)
chr1 (146-182)||(14321104-14321140)
chr1 (141-182)||(27858777-27858818)
chr1 (141-182)||(34767266-34767307)
chr1 (143-171)||(33776679-33776707)
[»] chr7 (1 HSPs)
chr7 (141-179)||(28749909-28749947)
[»] chr4 (7 HSPs)
chr4 (141-179)||(27924067-27924105)
chr4 (144-178)||(32004408-32004442)
chr4 (144-182)||(35803586-35803624)
chr4 (146-179)||(16467932-16467965)
chr4 (143-174)||(55292373-55292404)
chr4 (146-174)||(38179832-38179860)
chr4 (142-182)||(47769648-47769688)
[»] chr2 (3 HSPs)
chr2 (143-178)||(37807232-37807267)
chr2 (141-182)||(37985140-37985181)
chr2 (146-182)||(5963946-5963982)
[»] scaffold0024 (1 HSPs)
scaffold0024 (114-179)||(36209-36272)
[»] chr6 (3 HSPs)
chr6 (137-182)||(27133906-27133951)
chr6 (142-171)||(3807889-3807918)
chr6 (142-179)||(23898842-23898879)
[»] chr3 (3 HSPs)
chr3 (146-178)||(24924627-24924659)
chr3 (146-178)||(51672506-51672538)
chr3 (137-171)||(52201288-52201322)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 5775796 - 5775475
Alignment:
Q  8 ataatactccatgtgaaatccaatgcctttataaataaactgaaatccaacgccagtataaataaaatgatggttaaaaagttgatgtatatggttaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5775796 ataatactccatgtgaaatccaatgcctttataaataaagtgaaatccaacgccagtataaataaaatgatggttaaaaagttgatgtatatggttaaaa 5775697  T
Q  108 attaagggaaaatgttaactagtgtctttttaaggcactagttaagaagattaatatagaaattatgcattgaaataaacactgaaaaaatcaaatacta 207  Q
    ||||| |||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5775696 attaatggaaaatgtta----------------ggcactagttaagaagattaatatagaaattatgcattgaaataaacactgaaaaaatcaaacacta 5775613  T
Q  208 gattagggtttctataattgttgtaagagattatgattataatgtgatttgatttgattcaatagttgtctaaacaaaatttacactgttattatttgca 307  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5775612 gattagggtttctatacttattgtaagagattatgattataatgtgatttgatttgattcaataattgtctaaacaaaatttacactgttattatttgca 5775513  T
Q  308 taacagttatgattaatttgtttgttttgcctctattt 345  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5775512 taacagttatgattaatttgtttgttttgcctctattt 5775475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 5768981 - 5768826
Alignment:
Q  186 acactgaaaaaatcaaatactagattagggtttctataattgttgtaagagattatgattataatgtgatttgatttgattcaatagttgtctaaacaaa 285  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||| ||||  ||||||||||||||||    
T  5768981 acactgaaaaaatcaaacactagattagggtttctatacttgtcgtaagagactatgattataatatgatttgatttaattctgtagttgtctaaacaaa 5768882  T
Q  286 atttacactgttattatttgcataacagttatgattaatttgtttgttttgcctct 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5768881 atttacactgttattatttgcataacagttatgattaatttgtttattttgcctct 5768826  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 40197739 - 40197703
Alignment:
Q  143 cactagttaagaagattaatatagaaattatgcattg 179  Q
    |||||||||||||||||||||||||||||||||||||    
T  40197739 cactagttaagaagattaatatagaaattatgcattg 40197703  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 39074999 - 39075032
Alignment:
Q  149 ttaagaagattaatatagaaattatgcattgaaa 182  Q
    ||||||||||||||||||||||||||||||||||    
T  39074999 ttaagaagattaatatagaaattatgcattgaaa 39075032  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 3247803 - 3247769
Alignment:
Q  144 actagttaagaagattaatatagaaattatgcatt 178  Q
    ||||||||||||||||||||||||| |||||||||    
T  3247803 actagttaagaagattaatatagaagttatgcatt 3247769  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 15646121 - 15646162
Alignment:
Q  141 ggcactagttaagaagattaatatagaaattatgcattgaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15646121 ggcactagttaagaagattaatatagaaattatgcattgaaa 15646162  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 14321140 - 14321104
Alignment:
Q  146 tagttaagaagattaatatagaaattatgcattgaaa 182  Q
    |||||||||||||||||||||||||||||||||||||    
T  14321140 tagttaagaagattaatatagaaattatgcattgaaa 14321104  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 27858818 - 27858777
Alignment:
Q  141 ggcactagttaagaagattaatatagaaattatgcattgaaa 182  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||    
T  27858818 ggcactaattaagaagattaatataaaaattatgcgttgaaa 27858777  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 34767266 - 34767307
Alignment:
Q  141 ggcactagttaagaagattaatatagaaattatgcattgaaa 182  Q
    |||| |||||||||||||||||||| ||||||||| ||||||    
T  34767266 ggcattagttaagaagattaatataaaaattatgccttgaaa 34767307  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 171
Target Start/End: Original strand, 33776679 - 33776707
Alignment:
Q  143 cactagttaagaagattaatatagaaatt 171  Q
    |||||||||||||||||||||||||||||    
T  33776679 cactagttaagaagattaatatagaaatt 33776707  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 28749909 - 28749947
Alignment:
Q  141 ggcactagttaagaagattaatatagaaattatgcattg 179  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28749909 ggcactagttaagaagattaatatagaaattatgcattg 28749947  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 27924105 - 27924067
Alignment:
Q  141 ggcactagttaagaagattaatatagaaattatgcattg 179  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27924105 ggcactagttaagaagattaatatagaaattatgcattg 27924067  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 32004408 - 32004442
Alignment:
Q  144 actagttaagaagattaatatagaaattatgcatt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  32004408 actagttaagaagattaatatagaaattatgcatt 32004442  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 35803624 - 35803586
Alignment:
Q  144 actagttaagaagattaatatagaaattatgcattgaaa 182  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  35803624 actagttaagaagtttaatatagaaattatgcattgaaa 35803586  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 16467965 - 16467932
Alignment:
Q  146 tagttaagaagattaatatagaaattatgcattg 179  Q
    ||||||||||||||||||||||||||||||||||    
T  16467965 tagttaagaagattaatatagaaattatgcattg 16467932  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 55292404 - 55292373
Alignment:
Q  143 cactagttaagaagattaatatagaaattatg 174  Q
    ||||||||||||||||||||||||||||||||    
T  55292404 cactagttaagaagattaatatagaaattatg 55292373  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 38179832 - 38179860
Alignment:
Q  146 tagttaagaagattaatatagaaattatg 174  Q
    |||||||||||||||||||||||||||||    
T  38179832 tagttaagaagattaatatagaaattatg 38179860  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 47769648 - 47769688
Alignment:
Q  142 gcactagttaagaagattaatatagaaattatgcattgaaa 182  Q
    ||||||||||| |||||||||||| |||||||| |||||||    
T  47769648 gcactagttaaaaagattaatataaaaattatgtattgaaa 47769688  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 37807232 - 37807267
Alignment:
Q  143 cactagttaagaagattaatatagaaattatgcatt 178  Q
    ||||||||||||||||||||||||||||||||||||    
T  37807232 cactagttaagaagattaatatagaaattatgcatt 37807267  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 37985140 - 37985181
Alignment:
Q  141 ggcactagttaagaagattaatatagaaattatgcattgaaa 182  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  37985140 ggcactagttaataagattaatatagaaattatacattgaaa 37985181  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 5963946 - 5963982
Alignment:
Q  146 tagttaagaagattaatatagaaattatgcattgaaa 182  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  5963946 tagttaaaaagattaatataaaaattatgcattgaaa 5963982  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 36209 - 36272
Alignment:
Q  114 ggaaaatgttaactagtgtctttttaaggcactagttaagaagattaatatagaaattatgcattg 179  Q
    |||||||| ||||||||||| ||  | ||||||||||||||||| || ||||||||||||||||||    
T  36209 ggaaaatgctaactagtgtcctt--agggcactagttaagaagactattatagaaattatgcattg 36272  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 27133906 - 27133951
Alignment:
Q  137 ttaaggcactagttaagaagattaatatagaaattatgcattgaaa 182  Q
    |||||||| ||||||||||||||||||||| |||| ||||||||||    
T  27133906 ttaaggcattagttaagaagattaatatagtaattttgcattgaaa 27133951  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 3807889 - 3807918
Alignment:
Q  142 gcactagttaagaagattaatatagaaatt 171  Q
    ||||||||||||||||||||||||||||||    
T  3807889 gcactagttaagaagattaatatagaaatt 3807918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 23898879 - 23898842
Alignment:
Q  142 gcactagttaagaagattaatatagaaattatgcattg 179  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  23898879 gcactagttaagaagattaacatagaaattatgtattg 23898842  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 24924659 - 24924627
Alignment:
Q  146 tagttaagaagattaatatagaaattatgcatt 178  Q
    |||||||||||||||||||||||||||||||||    
T  24924659 tagttaagaagattaatatagaaattatgcatt 24924627  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 51672506 - 51672538
Alignment:
Q  146 tagttaagaagattaatatagaaattatgcatt 178  Q
    |||||||||||||||||||||||||||||||||    
T  51672506 tagttaagaagattaatatagaaattatgcatt 51672538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 52201288 - 52201322
Alignment:
Q  137 ttaaggcactagttaagaagattaatatagaaatt 171  Q
    ||||||||||||||||||||||||||||| |||||    
T  52201288 ttaaggcactagttaagaagattaatatataaatt 52201322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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