View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397_low_8 (Length: 327)
Name: NF4397_low_8
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 43220697 - 43220387
Alignment:
| Q |
1 |
tgagtcatactgtgtttcattcgaacctttaaaccttaaataattaatattcttttcagtgttatatgttaagtgcagcctaaatcaagctatttttctt |
100 |
Q |
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| T |
43220697 |
tgagtcatactgtgtttcattcgaacctttaaaccttaaataattaatattcttttcagtgttatatgttaagtgcaccctaaatcaagctatttttctt |
43220598 |
T |
|
| Q |
101 |
aaaagaattacagcttgtttaggtacatagacttttaatagtttcacgtaagaggatattacaaaatttggcttaaaatatcaacgatcttacctttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43220597 |
aaaagaattacagcttgtttaggtacatagacttttaatagtttcacgtaagaggatattacaaaatttggcttaaaatatcaacgatcttaccttcatt |
43220498 |
T |
|
| Q |
201 |
ttacgattctgatcaatgactttatttaagataccatgtagataaatggcacggactattctaacaccaaaaccctagtagataatggtgttctaaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43220497 |
ttacgattctgatcaatgactttatttaagataccatgtagatagatggcacggactattctaacaccaaaaccctagtagataatggtgttctaaacaa |
43220398 |
T |
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| Q |
301 |
ctgggtggtga |
311 |
Q |
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||||||||||| |
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| T |
43220397 |
ctgggtggtga |
43220387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 55902536 - 55902496
Alignment:
| Q |
1 |
tgagtcatactgtgtttcattcgaacctttaaaccttaaat |
41 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
55902536 |
tgaggcatactgtgtttcattcgaacctttaaaccttaaat |
55902496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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