View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4397_low_9 (Length: 324)
Name: NF4397_low_9
Description: NF4397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4397_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 27 - 306
Target Start/End: Original strand, 10124714 - 10124993
Alignment:
| Q |
27 |
ggtggtggtggaggatgtgatggttgaggaatattcaaggttagtggcaatggttgttgtggaagtggtggaatatttgggtgggcaaacattctttgaa |
126 |
Q |
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| T |
10124714 |
ggtggtggaggaggatgtgatggttgaggaatattcaaggttaacggcaatggttgttgttgaagtggtggaatatttgggtgggcaaacattctttgaa |
10124813 |
T |
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| Q |
127 |
acggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctctaatgggttgtgatttgtgaaagaaatcagagagaaaa |
226 |
Q |
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| T |
10124814 |
acggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctctaatgggttgtgatttttgaaagaaatcagagagaaaa |
10124913 |
T |
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| Q |
227 |
cgtagaatcaaaaggtttgttacgtgaaagaatgcataaattcaagggaatgagtaagactagggtatgacattggatag |
306 |
Q |
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| T |
10124914 |
cgtagaatcaaaaggtttgttacgtgaaataatgcataaattcaagggaatgagtaagactagggtctgacattggatag |
10124993 |
T |
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Back To:
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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 25043246 - 25043356
Alignment:
| Q |
91 |
gtggtggaatatttgggtgggcaaacattctttgaaacggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctcta |
190 |
Q |
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|||||||||| |||||||||| ||| || ||||||| | |||| |||||||||||||||||||||| | |||||||||||||| |||||| |||||| |
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| T |
25043246 |
gtggtggaatttttgggtgggaaaatatgaattgaaacagcgttagcatcggaagaggaagactttgtatcggttgttcagagtcgttcatttttctctt |
25043345 |
T |
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| Q |
191 |
atgggttgtga |
201 |
Q |
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| T |
25043346 |
atggattgtga |
25043356 |
T |
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