View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4398-Insertion-1 (Length: 1139)

Name: NF4398-Insertion-1
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4398-Insertion-1
NF4398-Insertion-1
[»] chr3 (12 HSPs)
chr3 (6-395)||(3705094-3705494)
chr3 (483-811)||(3708147-3708475)
chr3 (239-393)||(3712892-3713042)
chr3 (239-394)||(3701595-3701743)
chr3 (264-395)||(3719434-3719563)
chr3 (314-396)||(3707922-3708004)
chr3 (321-395)||(26807448-26807522)
chr3 (321-395)||(32775270-32775344)
chr3 (321-395)||(32814956-32815030)
chr3 (663-728)||(3702295-3702360)
chr3 (321-394)||(32772691-32772764)
chr3 (330-383)||(41845773-41845826)
[»] chr8 (8 HSPs)
chr8 (309-394)||(12483098-12483183)
chr8 (322-395)||(12289395-12289468)
chr8 (321-394)||(12670511-12670584)
chr8 (321-393)||(939435-939507)
chr8 (321-393)||(2105864-2105936)
chr8 (314-394)||(12482778-12482858)
chr8 (321-394)||(11949429-11949502)
chr8 (356-396)||(11949183-11949223)
[»] chr7 (2 HSPs)
chr7 (321-396)||(25796172-25796247)
chr7 (330-383)||(45343081-45343134)
[»] chr4 (4 HSPs)
chr4 (321-396)||(19185991-19186066)
chr4 (321-393)||(26741372-26741444)
chr4 (322-393)||(30161835-30161906)
chr4 (322-393)||(51386264-51386335)
[»] chr1 (5 HSPs)
chr1 (321-395)||(43849046-43849120)
chr1 (316-393)||(27981044-27981121)
chr1 (322-394)||(30953117-30953189)
chr1 (330-383)||(39755137-39755190)
chr1 (330-383)||(39760491-39760544)
[»] chr5 (4 HSPs)
chr5 (321-394)||(31965398-31965471)
chr5 (321-393)||(8219734-8219806)
chr5 (321-393)||(38322601-38322673)
chr5 (321-393)||(38327773-38327845)
[»] chr6 (3 HSPs)
chr6 (321-393)||(21882907-21882979)
chr6 (545-729)||(3520334-3520518)
chr6 (486-545)||(3520537-3520598)
[»] chr2 (4 HSPs)
chr2 (321-393)||(4767493-4767565)
chr2 (321-393)||(38551328-38551400)
chr2 (330-383)||(14428572-14428625)
chr2 (330-383)||(34962092-34962145)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 6 - 395
Target Start/End: Original strand, 3705094 - 3705494
Alignment:
Q  6 cacaaaccatattgtatgctattgaaagaggtatttcaccgctctagtcgttggaactcgcaagttacaaccctcaagttgagtaggattgtatataggt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3705094 cacaaaccatattgtatgctattgaaagaggtatttcaccgctctagtcgttggaactcgcaagttacaacactcaagttgagtaggattgtatataggt 3705193  T
Q  106 ggtaaaattccatcttagttcaaacttaatggatttgaatcctctaaagtgaatgaaatgtacaatcaaaaaatcaattgttatttgggacnnnnnnnca 205  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||  ||||||||||||       ||    
T  3705194 ggtaaaattccatctgagttcaaacttaatggatttgaatcctttaaagtgagtaaaatgtacaatcaaaaaatcaagagttatttgggacaaaaaaaca 3705293  T
Q  206 ttccttcaattttgacatcaagaaatttgga-----------ttagaagtttcctctgtcatattatcaatcattgtagtctgtagataataaatatcta 294  Q
    ||||| |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3705294 ttcctccaattttgacatcaagaaatttggacaattaagattttagaagtttcctctgtcatattatcaatcattgtagtctgtagataataaatatgta 3705393  T
Q  295 ataacattatcatcaattgaacaactaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3705394 ataacattatcatcaattgaataacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 3705493  T
Q  395 t 395  Q
    |    
T  3705494 t 3705494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 483 - 811
Target Start/End: Original strand, 3708147 - 3708475
Alignment:
Q  483 cggtctgggaattgtgttgttgcattctcaaggagagatatttgaggttaatttagccatcgatgttatgtcatacacggagcattggcaacagaaactt 582  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3708147 cggtctgggaattgtgttgttgcgttctcaaggagagatatttgaggttaatttagccatcgatgttatgtcatacacggagcattgccaacagaaactt 3708246  T
Q  583 ttaggcagca-gctaatttgttcaaacaatcaaagtaacaaatacgacgttctagttgctagcgatgcagtggggatggaactgaatctcaacatttgaa 681  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3708247 ttaggcagcaagctgatttgttcaaacaatcaaagtaacaaatacgacat-ctagttgctagtgatgcagtggggatggaactgaatctcaacatttgaa 3708345  T
Q  682 gggtgattttcaatagcctttcgaagtacaatggtgacaatattcttcatgtactggtgtcacaagttatttgcaagaagagccggttgaagaggatgcc 781  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3708346 gggtgattttcaatagcctttcgaagtacaatggtgacaaaattcttcgtgtactggtgtcacaagttatttgcaagaagagccggttgaagaggatgcc 3708445  T
Q  782 tttatctcgatggactcaccacaaccttgc 811  Q
    ||||||||||||||||||||||||||||||    
T  3708446 tttatctcgatggactcaccacaaccttgc 3708475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 239 - 393
Target Start/End: Original strand, 3712892 - 3713042
Alignment:
Q  239 agaagtttcctctgtcatattatcaatcattgtagtctgtagataataaatatctaataacattatcatcaattgaacaactaagcaccagtggtctagt 338  Q
    ||||||||||| |||||||||||||    ||||||||| |||||  |||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  3712892 agaagtttcctttgtcatattatca----ttgtagtctatagatgttaaatatctaataacattatcatcaaatgaacaacaaagcaccagtggtctagt 3712987  T
Q  339 ggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3712988 ggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 3713042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 239 - 394
Target Start/End: Original strand, 3701595 - 3701743
Alignment:
Q  239 agaagtttcctctgtcatattatcaatcattgtagtctgtagataataaatatctaataacattatcatcaattgaacaactaagcaccagtggtctagt 338  Q
    ||||||||||| |||||||||||||    || |||| | |||||  ||||||||||| |||||| | |   || ||||||| ||||||||||||||||||    
T  3701595 agaagtttcctttgtcatattatca----ttatagtatctagatgttaaatatctaacaacattttga---atagaacaacaaagcaccagtggtctagt 3701687  T
Q  339 ggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701688 ggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 3701743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 264 - 395
Target Start/End: Original strand, 3719434 - 3719563
Alignment:
Q  264 atcattgtagtctgtagataataaatatctaataacattatcatcaattgaacaactaagcaccagtggtctagtggtagaatagtaccctgccacggta 363  Q
    |||||||||| || |||||  |||| ||||||||| ||| |||  || || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3719434 atcattgtaggctctagatgttaaagatctaataatattgtca--aaatgtacaacaaagcaccagtggtctagtggtagaatagtaccctgccacggta 3719531  T
Q  364 cagacccgggttcgattcccggctggtgcaat 395  Q
    ||||||||||||||||||||||||||||||||    
T  3719532 cagacccgggttcgattcccggctggtgcaat 3719563  T

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Target: chr3; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 314 - 396
Target Start/End: Original strand, 3707922 - 3708004
Alignment:
Q  314 aacaactaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaata 396  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3707922 aacaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaata 3708004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 26807522 - 26807448
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26807522 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 26807448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 32775270 - 32775344
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32775270 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 32775344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 32814956 - 32815030
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32814956 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 32815030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 663 - 728
Target Start/End: Original strand, 3702295 - 3702360
Alignment:
Q  663 ctgaatctcaacatttgaagggtgattttcaatagcctttcgaagtacaatggtgacaatattctt 728  Q
    ||||| |||||||||  |||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  3702295 ctgaacctcaacattcaaagggtgattttcagtagcctttcgaagtacaatggtggcaaaattctt 3702360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 321 - 394
Target Start/End: Original strand, 32772691 - 32772764
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||  ||||| |||||| ||||| |||||    
T  32772691 aagcacaagtggtttaatggtagaatagtaccctgccacggtacagacttgggtttgattcctggctgctgcaa 32772764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 41845826 - 41845773
Alignment:
Q  330 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 383  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  41845826 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 41845773  T

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Target: chr8 (Bit Score: 78; Significance: 9e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 12483183 - 12483098
Alignment:
Q  309 aattgaacaactaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12483183 aattgaccaacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 12483098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 12289395 - 12289468
Alignment:
Q  322 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12289395 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 12289468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 12670584 - 12670511
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12670584 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 12670511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 939507 - 939435
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939507 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 939435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 2105864 - 2105936
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2105864 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 2105936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 314 - 394
Target Start/End: Complemental strand, 12482858 - 12482778
Alignment:
Q  314 aacaactaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  12482858 aacaacaaagcaccagtggtctagtggtagaatagtaccctgccatggtacagacccgggttcaattcctggctggtgcaa 12482778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 11949502 - 11949429
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  11949502 aagcaccagtggtctagtggtagaatagtaccctgccacgctacagacccgggttcaattcctggctggtgcaa 11949429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 11949223 - 11949183
Alignment:
Q  356 ccacggtacagacccgggttcgattcccggctggtgcaata 396  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  11949223 ccacggttcagacccgggttcaattcccggctggtgcaata 11949183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 25796172 - 25796247
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaata 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25796172 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaata 25796247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 45343134 - 45343081
Alignment:
Q  330 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 383  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  45343134 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 45343081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 19185991 - 19186066
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaata 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19185991 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaata 19186066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 26741444 - 26741372
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26741444 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 26741372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 30161835 - 30161906
Alignment:
Q  322 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161835 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 30161906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 51386335 - 51386264
Alignment:
Q  322 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51386335 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 51386264  T

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Target: chr1 (Bit Score: 75; Significance: 6e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 321 - 395
Target Start/End: Complemental strand, 43849120 - 43849046
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43849120 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaat 43849046  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 316 - 393
Target Start/End: Original strand, 27981044 - 27981121
Alignment:
Q  316 caactaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27981044 caacaaagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 27981121  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 322 - 394
Target Start/End: Complemental strand, 30953189 - 30953117
Alignment:
Q  322 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953189 agcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 30953117  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 39755137 - 39755190
Alignment:
Q  330 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 383  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  39755137 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 39755190  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 39760491 - 39760544
Alignment:
Q  330 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 383  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  39760491 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 39760544  T

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Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 31965471 - 31965398
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31965471 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgcaa 31965398  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 8219734 - 8219806
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8219734 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 8219806  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 38322601 - 38322673
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322601 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 38322673  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 38327773 - 38327845
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327773 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 38327845  T

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Target: chr6 (Bit Score: 73; Significance: 9e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 21882907 - 21882979
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21882907 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 21882979  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 545 - 729
Target Start/End: Complemental strand, 3520518 - 3520334
Alignment:
Q  545 atgttatgtcatacacggagcattggcaacagaaacttttaggcagca-gctaatttgttcaaacaatcaaagtaacaaatacgacgttctagttgctag 643  Q
    ||||| ||| ||| ||||||| ||| || |||| |||  ||||||||| |||||||||||||| | ||||||||||  |||| ||||||||||| |||||    
T  3520518 atgttgtgtgatatacggagctttgccaccagagactcgtaggcagcaagctaatttgttcaa-cgatcaaagtaatgaatatgacgttctagtagctag 3520420  T
Q  644 cgatgcagtggggatggaactgaatctcaacatttgaagggtgattttcaatagcctttcgaagtacaatggtgacaatattcttc 729  Q
     ||||||||||||||||  || || || |||||| ||||||||||||| |||| |||||| |||||||| |||||||| |||||||    
T  3520419 tgatgcagtggggatgggccttaaccttaacattcgaagggtgatttttaataacctttcaaagtacaacggtgacaaaattcttc 3520334  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 486 - 545
Target Start/End: Complemental strand, 3520598 - 3520537
Alignment:
Q  486 tctgggaattgtgttgttgcattctcaaggagaga--tatttgaggttaatttagccatcga 545  Q
    |||||| | ||||||||||| ||||||||||||||  ||||||||||||| ||||| |||||    
T  3520598 tctggggactgtgttgttgccttctcaaggagagagatatttgaggttaaattagctatcga 3520537  T

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Target: chr2 (Bit Score: 73; Significance: 9e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 4767565 - 4767493
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4767565 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 4767493  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 321 - 393
Target Start/End: Original strand, 38551328 - 38551400
Alignment:
Q  321 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551328 aagcaccagtggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattcccggctggtgca 38551400  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 14428572 - 14428625
Alignment:
Q  330 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 383  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  14428572 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 14428625  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 34962092 - 34962145
Alignment:
Q  330 tggtctagtggtagaatagtaccctgccacggtacagacccgggttcgattccc 383  Q
    |||| ||||||||  |||||||||| ||||||||| |||| |||||||||||||    
T  34962092 tggtgtagtggtatcatagtaccctcccacggtactgaccagggttcgattccc 34962145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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