View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4398-Insertion-4 (Length: 983)
Name: NF4398-Insertion-4
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398-Insertion-4 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 55 - 630
Target Start/End: Complemental strand, 23590081 - 23589514
Alignment:
| Q |
55 |
tcataacaacgatggttacaataaacttagaagtgtatgtttaaattgaccgtgattttaacaaaaactacactttaaaacttttacaaaatcatggtgt |
154 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23590081 |
tcataacaacgatggttacaataaacttagaagtgtatgtttaaattgacagtgattttaacaaaaactacacttcaaaacttttacaaaatcatggtgt |
23589982 |
T |
|
| Q |
155 |
aactgtggttaggtcaatctcactgtcaatctaaacacgttataagttacttgttacaaactttaaaaagaataaaactcaaatcctaactccaggcaca |
254 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23589981 |
ccctgtggttaggtcaatctcaccgtcaatctaaacacgttataagttacttgttacaaactttaaaaagaataaaactcaaatcctaactccaggcaca |
23589882 |
T |
|
| Q |
255 |
ttgtagtccaatatctgctacaaagtatagcacaagacataataagagagacaacaatacacatttgcatgtttgaataaaatggaagccgactgtgcat |
354 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |
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| T |
23589881 |
ttgtagtccaatatctgctacaaattatagcacaagacataataagagagacaacaatacacattttcatgtttgaaaaaaatggaagtcgactgtgcat |
23589782 |
T |
|
| Q |
355 |
aaggtaaatcagagtattatgattaaattttcacaaaaacattaaaagggcatagaaagtacagaaccaagtacataacgattaaacggagaaactcatt |
454 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23589781 |
aaggtaaatcagagtattaagattaaattttcacaaaaacattaaaagggcataaaaagtacagaaccaagtacataacgattgaacggagaaactcatt |
23589682 |
T |
|
| Q |
455 |
tcagagttactcttggagtcaagagatcccaaatcatttccaatatttaaagcaaaataattatttcacaatttcttggatctagccgagaataaataat |
554 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
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| T |
23589681 |
tcagagttactcttgaagtcaagagatcccgaatcatttccaatatttaaagcaaaatcatgatttcacaatttctcggatctagccgagaataaataat |
23589582 |
T |
|
| Q |
555 |
tgatcagcagatcagcagtccgaaaggttgtaatgttcacgacaagcacaggagagggtgatcatcagcagcggtc |
630 |
Q |
| |
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|
| T |
23589581 |
tgatca--------gcagtccgaaaggttttaatgttcacgacaagcacaggagagggtgatcatcagcagcggtc |
23589514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 695 - 967
Target Start/End: Complemental strand, 23589449 - 23589175
Alignment:
| Q |
695 |
tgtcaccctaacaacaaatcttcaacaatccttgtcaaaataaaaaacttcaataatgttgagcatagttttagattgtcgaggaaaaatagaaaagacc |
794 |
Q |
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| T |
23589449 |
tgtcaccctaacaacaaatcttcaacaatccttgtcaaaataaaaaacttcaataatgttgagcatagttttagattgtcgaggaaaaatagaaaagacc |
23589350 |
T |
|
| Q |
795 |
gctgtgaaaacatatatatctttttcatttctaaaatgtgttcattttaacttttgatgataagaagatgtgagactattgcttagcatagttttatcat |
894 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23589349 |
gctgtgaaatcatatatatttttttcatttctaaaatgtgttcattttaacttttgatgataagaagatgtgagactattgcttagcatagttttatcat |
23589250 |
T |
|
| Q |
895 |
cccagaatgaagcatgaaattgaactaaataaagcaacgggaaactcaccgat-gataat-agattaccacggcg |
967 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| |
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|
| T |
23589249 |
cccagaatgaagcatgaaattgaactaaataaagcaaccggaaactcaccgatggataataagattaccacggcg |
23589175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 23590185 - 23590136
Alignment:
| Q |
8 |
tgcagttcagcttccttgcaatataagttgtaacacacatctttatgtca |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23590185 |
tgcagttcagcttccttgcaatataagttgtaacacacatctttatgtca |
23590136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 396
Target Start/End: Complemental strand, 23585627 - 23585466
Alignment:
| Q |
235 |
aaatcctaactccaggcacattgtagtccaatatctgctacaaagtatagcacaagacataataagagagacaacaatacacatttgcatgtttgaataa |
334 |
Q |
| |
|
|||||||| || |||||||||| ||||||| |||||| |||| ||||| || ||||||||| ||| | | | || ||||||||| |||| ||| | |
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|
| T |
23585627 |
aaatcctaccttgaggcacattgaagtccaacatctgcaccaaattatagtactgaacataataaaagacaagaaattatacatttgcaagttttaatga |
23585528 |
T |
|
| Q |
335 |
aatggaagccgactgtgcataaggtaaatcagagtattatgattaaattttcacaaaaacat |
396 |
Q |
| |
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||||| || ||| ||||||||| || || ||||||||||||| ||| ||||| ||||||| |
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|
| T |
23585527 |
aatggcagtcgaatgtgcataaagttgattagagtattatgataaaagtttcatgaaaacat |
23585466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 423
Target Start/End: Complemental strand, 9969606 - 9969379
Alignment:
| Q |
197 |
taagttacttgttacaaactttaaaaagaataaaa-ctcaaatcctaactccaggcacattgtagtccaatatctgctacaaagta-tagcacaagacat |
294 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||| |||||| | ||| | || |||||||| |
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| T |
9969606 |
taagttactcgttagaaact--aaaaagaataaaaactcaattcctacctccaggcacattgtagtccagcatctgcaataaataacgagaacaagacac |
9969509 |
T |
|
| Q |
295 |
aataagagagacaacaatacacatttgcatgtttgaataaaatggaagccgactg--tgcataaggtaaatcagagtattatgattaaattttcacaaaa |
392 |
Q |
| |
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|||||| |||| | ||| | ||||||| |||||| ||| ||||||| | | | || | |||||| |||||||| |||| ||| | |||||||| ||| |
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| T |
9969508 |
aataagtgagatatcaaaatacatttgtatgtttcaatgaaatggaggacaaatgtatacataagataaatcagggtatcatgctctaattttcatgaaa |
9969409 |
T |
|
| Q |
393 |
acattaaaagggcatagaaagtacagaacca |
423 |
Q |
| |
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|| |||||||||||| |||||||||||||| |
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|
| T |
9969408 |
ac-ctaaaagggcataaaaagtacagaacca |
9969379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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