View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4398-Insertion-5 (Length: 483)

Name: NF4398-Insertion-5
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4398-Insertion-5
NF4398-Insertion-5
[»] scaffold0249 (1 HSPs)
scaffold0249 (8-169)||(2088-2249)
[»] chr2 (12 HSPs)
chr2 (8-169)||(6260011-6260172)
chr2 (8-169)||(19664913-19665074)
chr2 (53-159)||(23101308-23101414)
chr2 (378-470)||(28569611-28569703)
chr2 (369-468)||(21519873-21519972)
chr2 (414-468)||(19503560-19503614)
chr2 (414-468)||(36560365-36560419)
chr2 (53-108)||(23879111-23879166)
chr2 (53-102)||(23088957-23089006)
chr2 (414-468)||(35217194-35217248)
chr2 (391-447)||(42019047-42019103)
chr2 (66-147)||(26583939-26584021)
[»] chr8 (13 HSPs)
chr8 (8-169)||(27940691-27940852)
chr8 (369-468)||(34255641-34255740)
chr8 (369-468)||(41366129-41366228)
chr8 (53-135)||(23866711-23866792)
chr8 (369-468)||(17848582-17848681)
chr8 (374-468)||(15069623-15069717)
chr8 (375-468)||(31577479-31577572)
chr8 (8-84)||(30765834-30765910)
chr8 (369-468)||(4732591-4732690)
chr8 (369-474)||(29542955-29543060)
chr8 (414-468)||(18811764-18811818)
chr8 (414-468)||(27828041-27828095)
chr8 (414-468)||(43080658-43080712)
[»] scaffold0643 (1 HSPs)
scaffold0643 (20-169)||(8782-8931)
[»] scaffold0090 (1 HSPs)
scaffold0090 (8-169)||(18224-18385)
[»] chr7 (25 HSPs)
chr7 (8-169)||(148674-148835)
chr7 (369-474)||(26213723-26213828)
chr7 (67-169)||(14567330-14567435)
chr7 (53-159)||(16677399-16677505)
chr7 (53-159)||(17651635-17651741)
chr7 (369-468)||(48490338-48490437)
chr7 (53-135)||(13122792-13122873)
chr7 (53-135)||(13743805-13743886)
chr7 (21-128)||(1613615-1613723)
chr7 (369-468)||(6593669-6593768)
chr7 (369-468)||(18391307-18391406)
chr7 (389-468)||(44725585-44725664)
chr7 (374-468)||(24816547-24816641)
chr7 (369-468)||(38394994-38395090)
chr7 (374-468)||(7093648-7093739)
chr7 (414-468)||(1048513-1048567)
chr7 (414-468)||(7350875-7350929)
chr7 (414-468)||(22135813-22135867)
chr7 (414-468)||(40550840-40550894)
chr7 (53-135)||(12709724-12709802)
chr7 (369-468)||(47675273-47675372)
chr7 (401-451)||(13289710-13289760)
chr7 (389-468)||(6047494-6047573)
chr7 (414-468)||(36460-36514)
chr7 (414-468)||(31157509-31157563)
[»] chr5 (22 HSPs)
chr5 (8-169)||(42961621-42961783)
chr5 (376-467)||(534672-534763)
chr5 (369-468)||(18467685-18467784)
chr5 (369-468)||(26173713-26173812)
chr5 (369-468)||(16545373-16545472)
chr5 (369-468)||(29721308-29721407)
chr5 (369-468)||(40381049-40381148)
chr5 (369-467)||(9788357-9788455)
chr5 (8-84)||(1856406-1856482)
chr5 (8-84)||(21674376-21674452)
chr5 (376-468)||(42427574-42427666)
chr5 (369-468)||(16408268-16408367)
chr5 (369-468)||(6746069-6746168)
chr5 (414-468)||(10750699-10750753)
chr5 (414-468)||(15356073-15356127)
chr5 (414-468)||(23666047-23666101)
chr5 (414-468)||(34478643-34478697)
chr5 (412-468)||(20505428-20505484)
chr5 (414-468)||(31543734-31543788)
chr5 (8-86)||(38144460-38144537)
chr5 (369-462)||(13486964-13487057)
chr5 (404-465)||(32584792-32584853)
[»] scaffold0154 (1 HSPs)
scaffold0154 (8-159)||(30912-31064)
[»] chr6 (18 HSPs)
chr6 (8-159)||(18800492-18800644)
chr6 (62-169)||(25598740-25598847)
chr6 (82-169)||(4478004-4478091)
chr6 (53-159)||(21565057-21565163)
chr6 (369-468)||(16651870-16651969)
chr6 (389-468)||(30444294-30444373)
chr6 (369-468)||(16567919-16568018)
chr6 (41-137)||(929969-930064)
chr6 (374-470)||(12158250-12158346)
chr6 (369-468)||(16553609-16553708)
chr6 (369-468)||(16630165-16630264)
chr6 (369-468)||(34165817-34165916)
chr6 (401-468)||(5408237-5408304)
chr6 (401-468)||(5412562-5412629)
chr6 (369-468)||(25462645-25462744)
chr6 (414-468)||(26067619-26067673)
chr6 (414-468)||(33309890-33309944)
chr6 (67-147)||(29614008-29614089)
[»] scaffold0553 (1 HSPs)
scaffold0553 (67-169)||(10022-10124)
[»] scaffold0544 (1 HSPs)
scaffold0544 (67-169)||(1352-1454)
[»] chr3 (36 HSPs)
chr3 (67-169)||(23370332-23370434)
chr3 (35-137)||(16798569-16798672)
chr3 (53-159)||(55498947-55499053)
chr3 (369-468)||(4309689-4309788)
chr3 (369-468)||(5898389-5898488)
chr3 (369-468)||(7763204-7763303)
chr3 (369-468)||(18098350-18098449)
chr3 (369-468)||(23199274-23199373)
chr3 (369-468)||(32892023-32892121)
chr3 (369-468)||(43227057-43227156)
chr3 (378-468)||(6717446-6717536)
chr3 (375-468)||(29811802-29811895)
chr3 (369-468)||(4599855-4599954)
chr3 (379-468)||(5259468-5259557)
chr3 (8-84)||(13967723-13967799)
chr3 (8-84)||(13973198-13973274)
chr3 (8-84)||(24122182-24122258)
chr3 (369-468)||(7769535-7769634)
chr3 (369-468)||(10057178-10057277)
chr3 (369-468)||(10059400-10059499)
chr3 (369-468)||(10061622-10061721)
chr3 (369-468)||(10063844-10063943)
chr3 (369-468)||(10066066-10066165)
chr3 (369-468)||(10210134-10210233)
chr3 (369-468)||(37407622-37407721)
chr3 (369-464)||(15830377-15830472)
chr3 (414-468)||(5192630-5192684)
chr3 (414-468)||(5192861-5192915)
chr3 (414-468)||(6065017-6065071)
chr3 (414-468)||(10957547-10957601)
chr3 (369-467)||(27421619-27421717)
chr3 (391-468)||(9635281-9635358)
chr3 (411-468)||(15821863-15821920)
chr3 (414-468)||(11169081-11169135)
chr3 (414-468)||(456887-456941)
chr3 (369-425)||(23634450-23634506)
[»] scaffold1913 (1 HSPs)
scaffold1913 (53-164)||(936-1048)
[»] scaffold0535 (1 HSPs)
scaffold0535 (53-159)||(5047-5154)
[»] scaffold0026 (1 HSPs)
scaffold0026 (8-163)||(11696-11851)
[»] chr4 (19 HSPs)
chr4 (41-148)||(8045695-8045801)
chr4 (369-468)||(12740868-12740967)
chr4 (369-468)||(12749074-12749173)
chr4 (378-468)||(8394351-8394441)
chr4 (375-468)||(52094504-52094597)
chr4 (369-468)||(5137025-5137124)
chr4 (369-468)||(12402275-12402374)
chr4 (374-465)||(4588888-4588978)
chr4 (369-468)||(7123641-7123740)
chr4 (369-464)||(12400000-12400095)
chr4 (369-468)||(26558642-26558741)
chr4 (414-468)||(11007792-11007846)
chr4 (414-468)||(16933372-16933426)
chr4 (414-468)||(22045939-22045993)
chr4 (414-468)||(22781961-22782015)
chr4 (414-478)||(9175696-9175760)
chr4 (41-145)||(11848200-11848306)
chr4 (414-468)||(22133841-22133895)
chr4 (369-447)||(5206798-5206877)
[»] scaffold0160 (1 HSPs)
scaffold0160 (53-159)||(15956-16063)
[»] scaffold0127 (1 HSPs)
scaffold0127 (73-169)||(10371-10468)
[»] scaffold1773 (1 HSPs)
scaffold1773 (41-137)||(1264-1359)
[»] scaffold0006 (1 HSPs)
scaffold0006 (41-137)||(50265-50360)
[»] scaffold0476 (1 HSPs)
scaffold0476 (53-159)||(3138-3244)
[»] scaffold0077 (1 HSPs)
scaffold0077 (53-159)||(3467-3573)
[»] chr1 (15 HSPs)
chr1 (369-468)||(13126916-13127015)
chr1 (369-470)||(3805310-3805411)
chr1 (369-468)||(31658137-31658236)
chr1 (369-468)||(28222557-28222656)
chr1 (369-468)||(50168486-50168585)
chr1 (369-451)||(776023-776105)
chr1 (369-468)||(28841423-28841519)
chr1 (369-468)||(27338312-27338411)
chr1 (414-468)||(16227169-16227223)
chr1 (414-468)||(47178363-47178417)
chr1 (414-468)||(51751038-51751092)
chr1 (369-468)||(20301132-20301228)
chr1 (369-461)||(28202879-28202971)
chr1 (369-468)||(8348250-8348349)
chr1 (376-468)||(45654851-45654942)
[»] scaffold0247 (1 HSPs)
scaffold0247 (8-108)||(11396-11497)
[»] scaffold0117 (2 HSPs)
scaffold0117 (56-135)||(8452-8530)
scaffold0117 (56-135)||(1775-1853)
[»] scaffold0025 (1 HSPs)
scaffold0025 (369-468)||(72696-72795)
[»] scaffold0011 (2 HSPs)
scaffold0011 (369-468)||(34556-34655)
scaffold0011 (14-128)||(153342-153457)
[»] scaffold0091 (1 HSPs)
scaffold0091 (53-135)||(1644-1725)
[»] scaffold0029 (2 HSPs)
scaffold0029 (52-137)||(111979-112064)
scaffold0029 (52-136)||(116882-116965)
[»] scaffold0016 (1 HSPs)
scaffold0016 (369-468)||(115536-115635)
[»] scaffold0140 (1 HSPs)
scaffold0140 (414-468)||(23127-23181)
[»] scaffold0924 (1 HSPs)
scaffold0924 (53-137)||(624-707)
[»] scaffold1899 (1 HSPs)
scaffold1899 (414-468)||(625-679)
[»] scaffold0219 (1 HSPs)
scaffold0219 (392-459)||(26575-26642)
[»] scaffold2054 (1 HSPs)
scaffold2054 (55-137)||(814-896)


Alignment Details
Target: scaffold0249 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 2249 - 2088
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacg 107  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2249 agttttgcagaatgattacacagcacaatcggttcctaagccctcctctcttgttcttgctcttcttctcccttttctcccaaaagctagttttcttacg 2150  T
Q  108 ttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2149 ttaaaacgttctgactgtttttctttctttttctaactcccaaactataacttccctatttc 2088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 6260172 - 6260011
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacg 107  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6260172 agttttgcagaatgattacacagcacaatcggttcctaagccctcctctcttgttcttgctcttcttctcccttttctcccaaaagctagttttcttacg 6260073  T
Q  108 ttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6260072 ttaaaacgttctgactgtttttctttctttttctaactcccaaactataacttccctatttc 6260011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 19665074 - 19664913
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacg 107  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  19665074 agttttgcagaatgattacacagcacaatcggttcctaagccctcctctcttgttcttgctcttcttctcccttttctcccaaaagctagttttcgtacg 19664975  T
Q  108 ttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    ||| ||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||    
T  19664974 ttaaaacgttctgactgtttttctttctttttctaactcccaaactataatttccttatttc 19664913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 23101414 - 23101308
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||| ||||| ||||||||||||||||| |||    
T  23101414 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttctgactg-ttttctttctttttctaactcccaaaa 23101316  T
Q  152 ctataact 159  Q
    ||||||||    
T  23101315 ctataact 23101308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 378 - 470
Target Start/End: Original strand, 28569611 - 28569703
Alignment:
Q  378 ttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttcta 470  Q
    |||||||| | ||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  28569611 ttgaaacacttaggtcttcaccgttttcatcagctctcaagtccttggacttggtcatctccttggttctcaaagtcacttgaacttcttcta 28569703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 21519873 - 21519972
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||  | || |||| |||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||    
T  21519873 cattccctcttgagacacttaggccttcactgtgttaataaactctcaagtccttggactgggtcaactccttggttctcaaagccgcttgaacttcttc 21519972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 19503560 - 19503614
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  19503560 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 19503614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 36560365 - 36560419
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  36560365 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 36560419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 23879111 - 23879166
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgt 108  Q
    |||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||    
T  23879111 ctctcttgttcttgcttttcctctcccttttcttccaaaagctagttttcttacgt 23879166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 23089006 - 23088957
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttc 102  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  23089006 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttc 23088957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 35217194 - 35217248
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||||||||||||||||  ||||||||||||||| |  |||||||||||||    
T  35217194 tcaagtccttggacttggtcaaatccttggttctcaaagctgcttgaacttcttc 35217248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 42019047 - 42019103
Alignment:
Q  391 gccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttct 447  Q
    |||||||| |||||||| | |||||||||||||||||||||| | || |||||||||    
T  42019047 gccttcactattttcatcaactctcaagtccttggacttggttaacttcttggttct 42019103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 26583939 - 26584021
Alignment:
Q  66 gctcttcttctccattttctcccaaaagct-agttttcttacgttacaacgtgctgactgtttttccttctttttctaactcc 147  Q
    ||||||||||||| ||||  || ||||||| | | ||||||||| | |||||  |||||||||||| ||||||||||||||||    
T  26583939 gctcttcttctccctttttcccaaaaagcttaatgttcttacgtaaaaacgttttgactgtttttctttctttttctaactcc 26584021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 27940852 - 27940691
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacg 107  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  27940852 agttttgcagaatgattacacagcacaatcggttcctaagccctcctctcttgttcttgctcttcttctcccttttctcccaaaagctagttttcatacg 27940753  T
Q  108 ttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27940752 ttaaaacgttctgactgtttttctttctttttctaactcccaaactataacttccctatttc 27940691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 34255641 - 34255740
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  34255641 catttccttttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccacttgaacttcttc 34255740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 41366129 - 41366228
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||||||||||  |||||||  ||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||    
T  41366129 catttcctcttgaaacactaaggccttcactgttttcatccgctctcaagtctttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 41366228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 23866711 - 23866792
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttct 135  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  23866711 ctctcttgttcttgctcttcttctcccttttctcccaaaagctag-tttcttacgttaaaacgttctgactgtttttctttct 23866792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 17848681 - 17848582
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||||  | ||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||| |  |||||||||||||    
T  17848681 cattccctcttgaaacagatatgccttcaccgttttcatcagctctcaagtccttggacttggtttgctccttggttctcaaagcagcttgaacttcttc 17848582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 374 - 468
Target Start/End: Complemental strand, 15069717 - 15069623
Alignment:
Q  374 cctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||| ||| | ||||||||||| | ||||| | |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  15069717 cctcttgagacacttaggccttcaccgtgttcatgaactctcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 15069623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 31577479 - 31577572
Alignment:
Q  375 ctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||| | |||||||||||||||| || |  ||||||||||||||||||||| | ||| |||||||||||| || |||||||||||||    
T  31577479 ctcttgaaacacttaggccttcaccattttaatcaattctcaagtccttggacttggttaactcattggttctcaaagccgcttgaacttcttc 31577572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 30765910 - 30765834
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttc 84  Q
    |||||||||||| ||| | ||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  30765910 agttttgcagaaagataaaacagcacaatcggttcctaagccttcctctcttgttcttgctcttcttctcccttttc 30765834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 4732690 - 4732591
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||| ||||||  |||||||  ||||||| ||||||||||||||||| |||||||||| | ||| || |||||||||||||    
T  4732690 catttcctcttgaaacactaaggtcttcactgttttcatccgctctcatgtccttggacttggtcaactccttggtttttaaagccgcttgaacttcttc 4732591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 474
Target Start/End: Complemental strand, 29543060 - 29542955
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| | ||||||||||  |||||||  |||||||||| |||||||||||||| |||||||| ||| ||| || |||||||||| ||    
T  29543060 catttcctcttgaaacacttaggccttcactgttttcatccgctctcaagttcttggacttggtcaactccttgggtcttaaagccgcttgaacttcctc 29542961  T
Q  469 tatggt 474  Q
     |||||    
T  29542960 catggt 29542955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 18811818 - 18811764
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  18811818 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 18811764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 27828095 - 27828041
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  27828095 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 27828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 43080712 - 43080658
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  43080712 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 43080658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 8931 - 8782
Alignment:
Q  20 tgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgct 119  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||    
T  8931 tgattacacagcacaatcggttcctaagccctcctctcttgttcttgctcttcttctcccttttctcccaaaagctagttttcttacgttaaaacgttct 8832  T
Q  120 gactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8831 gactgtttttctttctttttctaactcccaaactataacttccctatttc 8782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 18224 - 18385
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacg 107  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  18224 agttttgcagaatgattacacaacacaatcggttcctaagccctcctctcttgtccttgctcttcttctcccttttctcccaaaagctagttttcttacg 18323  T
Q  108 ttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    | | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18324 taaaaacgttctgactgtttttctttctttttctaactcccaaactataacttccctatttc 18385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 148674 - 148835
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacg 107  Q
    |||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  148674 agttttgcagaatgattacacaacacaatcagttcctaagccctcctctcttgttcttgctctccttctcccttttctcccaaaagctagttttcttacg 148773  T
Q  108 ttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    ||| |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  148774 ttaaaacgttatgactgtttttctttctttttctaactcccaaactataacttccctatttc 148835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 369 - 474
Target Start/End: Complemental strand, 26213828 - 26213723
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  26213828 cattacctcttgaaacactaaggccttcaccattttcataagctctcaagtccttggacttggtcagctcattggttcttaaagccacttgaacttcttc 26213729  T
Q  469 tatggt 474  Q
     |||||    
T  26213728 catggt 26213723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 14567330 - 14567435
Alignment:
Q  67 ctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttc---cttctttttctaactcccaaactataacttccc 163  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||   ||| |||||||||||||||||||||||||||||    
T  14567330 ctctccttctcccttttctcccaaaagctagttttcttacgttaaaacgttcagactgtttttctttcttttttttctaactcccaaactataacttccc 14567429  T
Q  164 tatttc 169  Q
    ||||||    
T  14567430 tatttc 14567435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 16677399 - 16677505
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||| ||||| ||||||||||||||||| |||    
T  16677399 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttctgactg-ttttctttctttttctaactcccaaaa 16677497  T
Q  152 ctataact 159  Q
    ||||||||    
T  16677498 ctataact 16677505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 17651635 - 17651741
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||| ||||| ||||||||||||||||| |||    
T  17651635 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttctgactg-ttttctttctttttctaactcccaaaa 17651733  T
Q  152 ctataact 159  Q
    ||||||||    
T  17651734 ctataact 17651741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 48490437 - 48490338
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  48490437 catttcctcttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 48490338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 13122873 - 13122792
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttct 135  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  13122873 ctctcttgttcttgctcttcttctcccttttctcccaaaagctag-tttcttacgttaaaacgttctgactgtttttctttct 13122792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 13743805 - 13743886
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttct 135  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  13743805 ctctcttgttcttgctcttcttctcccttttctccccaaagctag-tttcttacgttaaaacgttctgactgtttttctttct 13743886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 1613615 - 1613723
Alignment:
Q  21 gattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagc-tagttttcttacgttacaacgtgct 119  Q
    |||| |||||||  ||||||| ||| || ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| | ||||| ||    
T  1613615 gattgcacagcaaaatcggttcctaggctctcctctcttgttcttgctcttcatctcccttttctcccaaaagcttagttttcttacgtaaaaacgttct 1613714  T
Q  120 gactgtttt 128  Q
    |||| ||||    
T  1613715 gactctttt 1613723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 6593669 - 6593768
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  6593669 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 6593768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 18391307 - 18391406
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  18391307 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 18391406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 44725664 - 44725585
Alignment:
Q  389 aggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||| | ||||| | |||||||||||||||||||||||| || ||||||||||||| || |||||||||||||    
T  44725664 aggccttcaccgtgttcatgaactctcaagtccttggacttggtcaacttcttggttctcaaagccgcttgaacttcttc 44725585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 24816547 - 24816641
Alignment:
Q  374 cctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||||||| | | |||||| || ||||||| |||| |||||| |||||||| ||||| |||||||||||||||| || |||||||||||||    
T  24816547 cctcttgaaacacttatgccttccccgttttcatcagctttcaagttcttggactgggtcaactccttggttctcaaagccgcttgaacttcttc 24816641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 38395090 - 38394994
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||| | ||||| ||   ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  38395090 cattccctcttgagacacttaggccttcaccgtgttcatgag---tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 38394994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 7093648 - 7093739
Alignment:
Q  374 cctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||| ||| | ||||||||||||| |||||  |   ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  7093648 cctcttgagacacttaggccttcaccatgttcatggg---tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 7093739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 1048513 - 1048567
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  1048513 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 1048567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 7350875 - 7350929
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  7350875 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 7350929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 22135867 - 22135813
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  22135867 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 22135813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 40550894 - 40550840
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  40550894 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 40550840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 12709802 - 12709724
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttct 135  Q
    |||||||||||||||||||||   || ||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| ||||    
T  12709802 ctctcttgttcttgctcttct---cccttttctcgcaaaagctagttt-cttacgttaaaacgttctgactgtttttctttct 12709724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 47675273 - 47675372
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||  ||||||  ||||||   |||||||||||||| |||||||||| |||| ||||||| ||| || |||||||||||||    
T  47675273 catttcctcttgaaacactaagaacttcactgttttcacccgctctcaagtccttagacttggtcaactccctggttcttaaagccgcttgaacttcttc 47675372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 13289710 - 13289760
Alignment:
Q  401 ttttcataagctctcaagtccttggacttggtcagctccttggttctcaaa 451  Q
    ||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  13289710 ttttcatcatctctcaagtccttggacttggtcaactccttggttctcaaa 13289760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 6047573 - 6047494
Alignment:
Q  389 aggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||| ||||||| || |||||||| |||||||||||| | ||| ||| |||||||| || |||||||||||||    
T  6047573 aggcgttcaccgttttcatcagttctcaagttcttggacttggtaaactcgttgattctcaaagccgcttgaacttcttc 6047494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 36514 - 36460
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||| ||||||| |||||||||||||||| || |||||| ||||||    
T  36514 tcaagtccttggagttggtcaactccttggttctcaaagccgcttgaatttcttc 36460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 31157509 - 31157563
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||| ||||||||| |  |||||||||||||    
T  31157509 tcaagtccttggacttggtcaactccttagttctcaaagctgcttgaacttcttc 31157563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 42961621 - 42961783
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacg 107  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42961621 agttttgcagaatgattacacagcacaatcggttcctaagccctcctctcttgttcttgctcttcttctcccttttctcccaaaagctagttttcttacg 42961720  T
Q  108 tt-acaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    || | || ||  |||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  42961721 ttaaaaatgttatgactgtttttctttctttttctaactctcaaactataacttccctatttc 42961783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 376 - 467
Target Start/End: Complemental strand, 534763 - 534672
Alignment:
Q  376 tcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttctt 467  Q
    |||||||||| |||||| |||||  |||||||  ||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||    
T  534763 tcttgaaacactaaggcattcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaatccgcttgaacttctt 534672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 18467784 - 18467685
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| | ||||||||||| | ||||| | |||||||||||||||||||||||| ||||||| |||||||| || |||||||||||||    
T  18467784 cattccctcttgaaacacttaggccttcaccgtgttcatgaactctcaagtccttggacttggtcaactccttgattctcaaagccgcttgaacttcttc 18467685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 26173812 - 26173713
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  26173812 catttccttttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 26173713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 16545472 - 16545373
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  16545472 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 16545373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 29721407 - 29721308
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| ||||||||||||  |||||||  ||||| ||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  29721407 catttccttttgaaacactaaggccttcactgttttcatctgctcttaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 29721308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 40381148 - 40381049
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  40381148 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 40381049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 467
Target Start/End: Original strand, 9788357 - 9788455
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttctt 467  Q
    |||| ||| |||||||| ||||||| ||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || ||||||||||||    
T  9788357 catttccttttgaaacactaaggccgtcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttctt 9788455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 1856482 - 1856406
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttc 84  Q
    |||||||||||| ||||| ||||||| ||||||| |||| |||||| |||||||||||||||||||||||| |||||    
T  1856482 agttttgcagaaagattaaacagcacaatcggttcctaaaccctcccctcttgttcttgctcttcttctcccttttc 1856406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 21674452 - 21674376
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttc 84  Q
    |||||||||||| ||||| ||||||| ||||||| |||| |||||| |||||||||||||||||||||||| |||||    
T  21674452 agttttgcagaaagattaaacagcacaatcggttcctaaaccctcccctcttgttcttgctcttcttctcccttttc 21674376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 376 - 468
Target Start/End: Original strand, 42427574 - 42427666
Alignment:
Q  376 tcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||||| ||||||||||||  |||||||  ||||| ||||||||||||||||||| |||||||||||| |||  | |||||||||||||    
T  42427574 tcttgaaacactaaggccttcactgttttcatccgctctgaagtccttggacttggtcaactccttggttcttaaagtcgcttgaacttcttc 42427666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 16408367 - 16408268
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| |||||||||||   | |||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  16408367 catttccttttgaaacactaaggccttcattgtcttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 16408268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 6746168 - 6746069
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||| | | ||||  | |||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||    
T  6746168 catttcctcttgagacacttaggccttcatcgtgttcacgaactctcaagtcattggacttggtcaactccttggttctcaaagccgcttgaacttcttc 6746069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 10750753 - 10750699
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  10750753 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 10750699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 15356073 - 15356127
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  15356073 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 15356127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 23666101 - 23666047
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  23666101 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 23666047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 34478643 - 34478697
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  34478643 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 34478697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 20505428 - 20505484
Alignment:
Q  412 tctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||||| |||||| ||||||||| || |||||||||||||    
T  20505428 tctcaagtccttggacttggtcaactccttagttctcaaagccgcttgaacttcttc 20505484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 31543788 - 31543734
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| |  |||||||||||||    
T  31543788 tcaagtccttggacttggtcaactccttggttctcaaagctgcttgaacttcttc 31543734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 38144537 - 38144460
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctc 86  Q
    |||||||||||||||||||||||||| ||||||| |||||  || |||||||| |||| |||| ||||||| |||||||    
T  38144537 agttttgcagaatgattacacagcacaatcggttcctaagttcttctctcttggtctt-ctctccttctcccttttctc 38144460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 462
Target Start/End: Complemental strand, 13487057 - 13486964
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaac 462  Q
    |||| |||||||||||| ||| |||||||   |||||||  ||||| |||||||| |||||||||| |||||||||| | ||| || |||||||    
T  13487057 cattccctcttgaaacactaatgccttcattgttttcatccgctcttaagtccttagacttggtcaactccttggtttttaaagccgcttgaac 13486964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 465
Target Start/End: Complemental strand, 32584853 - 32584792
Alignment:
Q  404 tcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttc 465  Q
    |||| ||||||||||||| |||||||||| | ||| ||||||||||| ||| |||| |||||    
T  32584853 tcatcagctctcaagtccatggacttggttaactctttggttctcaattccgcttggacttc 32584792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 30912 - 31064
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagc-tagttttcttac 106  Q
    |||||||||||| ||||||||||||  |||| || ||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  30912 agttttgcagaaggattacacagcaaaatcgattcctaggctctcctctcttgttcttgctcttcttctcccttttctcccaaaagcttagttttcttac 31011  T
Q  107 gttacaacgtgctgactgtttttccttctttttctaactcccaaactataact 159  Q
    || | ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  31012 gtaaaaacgttctgactgtttttctttctttttctaactcccaaactataact 31064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 18800492 - 18800644
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagc-tagttttcttac 106  Q
    |||||||||||| ||||||||||||  ||||||| ||| || ||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  18800492 agttttgcagaaggattacacagcaaaatcggttcctaggctctcctatcttgttcttgctcttcttctcccttttctcccaaaaacttagttttcttac 18800591  T
Q  107 gttacaacgtgctgactgtttttccttctttttctaactcccaaactataact 159  Q
    || | ||||| |||||||||| |  ||||||||||||||||||||||||||||    
T  18800592 gtaaaaacgtactgactgtttctttttctttttctaactcccaaactataact 18800644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 169
Target Start/End: Original strand, 25598740 - 25598847
Alignment:
Q  62 tcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttc 161  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||| ||| | || |||||||||| ||||||||||||||||||||||||||||||    
T  25598740 tcttgctcctcttctcccttttctcccaaaagctagttttcttacgttaaaacattctaactgtttttctttctttttctaactcccaaactataacttc 25598839  T
Q  162 cctatttc 169  Q
    ||||||||    
T  25598840 cctatttc 25598847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 4478004 - 4478091
Alignment:
Q  82 ttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4478004 ttctcccaaaagctagttttcttacgttaaaacattctgactgtttttctttctttttctaactcccaaactataacttccctatttc 4478091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 21565163 - 21565057
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||| ||||| ||||||||||||||||| |||    
T  21565163 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttctgactg-ttttctttctttttctaactcccaaaa 21565065  T
Q  152 ctataact 159  Q
    ||||||||    
T  21565064 ctataact 21565057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 16651969 - 16651870
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
T  16651969 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccacttgaacttcttc 16651870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 30444373 - 30444294
Alignment:
Q  389 aggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  30444373 aggccttcaccgttttcatcggctctcaagcccttggacttggtcaactccttggttctcaaagccacttgaacttcttc 30444294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 16568018 - 16567919
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| || ||||||||| ||| || |||||||||||||    
T  16568018 catttccttttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaacttcttggttcttaaagccgcttgaacttcttc 16567919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 930064 - 929969
Alignment:
Q  41 ttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttcttt 137  Q
    ||||| || ||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||||| | |||||  |||||||||||| ||||||    
T  930064 ttctaggctctcctctcttgatcttgctcttcttcccccttttctccc-aaagctagttttcttacgtaaaaacgttttgactgtttttctttcttt 929969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 374 - 470
Target Start/End: Complemental strand, 12158346 - 12158250
Alignment:
Q  374 cctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttcta 470  Q
    |||||||||||| | || |||||||| ||||||| |||| |||| |||||||||||||||| |||||||||||||||| ||  |||||| |||||||    
T  12158346 cctcttgaaacacttagaccttcaccgttttcatcagctatcaaatccttggacttggtcaactccttggttctcaaagccgtttgaacatcttcta 12158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 16553708 - 16553609
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  |||||||||||| |||||||||||| |||||||||||| ||| || |||||||||||||    
T  16553708 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccctggacttggtcaactccttggttcttaaagccgcttgaacttcttc 16553609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 16630264 - 16630165
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  |||||||||||| |||||||||||| |||||||||||| ||| || |||||||||||||    
T  16630264 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccctggacttggtcaactccttggttcttaaagccgcttgaacttcttc 16630165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 34165916 - 34165817
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  |||||||||||||| |||||||||| |||||||||||| ||| || |||||||||||||    
T  34165916 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaagccgcttgaacttcttc 34165817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 5408237 - 5408304
Alignment:
Q  401 ttttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||  |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||    
T  5408237 ttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaatccgcttgaacttcttc 5408304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 401 - 468
Target Start/End: Original strand, 5412562 - 5412629
Alignment:
Q  401 ttttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||  |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||    
T  5412562 ttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaatccgcttgaacttcttc 5412629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 25462645 - 25462744
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| | ||||||||||  ||||||| |  ||||||||||||| ||| ||||| ||||||||||||||||  | |||||||||||||    
T  25462645 cattccctcttgaaacacttaggccttcactgttttcatcaattctcaagtccttgaactcggtcaactccttggttctcaaagtcgcttgaacttcttc 25462744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 26067619 - 26067673
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  26067619 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 26067673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 33309944 - 33309890
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  33309944 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 33309890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 29614089 - 29614008
Alignment:
Q  67 ctcttcttctccattttctcccaaaagc-tagttttcttacgttacaacgtgctgactgtttttccttctttttctaactcc 147  Q
    |||||||||||| ||||||||||||||| || | ||||||||| | |||||  |||||||| ||| ||||||||||||||||    
T  29614089 ctcttcttctcccttttctcccaaaagcttaatgttcttacgtaaaaacgttttgactgttattctttctttttctaactcc 29614008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 10124 - 10022
Alignment:
Q  67 ctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctat 166  Q
    |||| ||||||| ||||||||||||||||| ||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  10124 ctctccttctcccttttctcccaaaagctaattttcttacgttaaaacgttatgactgtttttctttctttttctaactcccaaactataacttccctat 10025  T
Q  167 ttc 169  Q
    |||    
T  10024 ttc 10022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 1454 - 1352
Alignment:
Q  67 ctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctat 166  Q
    |||| ||||||| ||||||||||||||||| ||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  1454 ctctccttctcccttttctcccaaaagctaattttcttacgttaaaacgttatgactgtttttctttctttttctaactcccaaactataacttccctat 1355  T
Q  167 ttc 169  Q
    |||    
T  1354 ttc 1352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 23370434 - 23370332
Alignment:
Q  67 ctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctat 166  Q
    |||| ||||||| ||||||||||||||||| ||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  23370434 ctctccttctcccttttctcccaaaagctaattttcttacgttaaaacgttatgactgtttttctttctttttctaactcccaaactataacttccctat 23370335  T
Q  167 ttc 169  Q
    |||    
T  23370334 ttc 23370332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 16798672 - 16798569
Alignment:
Q  35 atcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagc-tagttttcttacgttacaacgtgctgactgtttttcctt 133  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||||| ||||||||||||| ||    
T  16798672 atcggttcctaagctctcctctcttgttcttgctcttcttctcccttttctcccaaaagcttagttttcttacgtaaaaacgttctgactgtttttcttt 16798573  T
Q  134 cttt 137  Q
    ||||    
T  16798572 cttt 16798569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 55499053 - 55498947
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||| ||||| ||||||||||||||||| |||    
T  55499053 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttctgactg-ttttctttctttttctaactcccaaaa 55498955  T
Q  152 ctataact 159  Q
    ||||||||    
T  55498954 ctataact 55498947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 4309689 - 4309788
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| | ||||||||||| | ||||| | |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  4309689 cattccctcttgaaacacttaggccttcaccgtgttcatgaactctcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 4309788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 5898488 - 5898389
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| ||||||||||||| | ||||| | |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  5898488 cattccctcttgagacactaaggccttcaccgtgttcatgatctctcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 5898389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 7763303 - 7763204
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||||||||| || ||||||||||||| |||||||  ||||||||||||||||||||||| | |||||||||||| ||| || |||||||||||||    
T  7763303 catttcctcttgaagcactaaggccttcaccgttttcatccgctctcaagtccttggacttggttaactccttggttcttaaagccgcttgaacttcttc 7763204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 18098350 - 18098449
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||| | ||||| | |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  18098350 cattccctcttgagacacttaggccttcaccgtgttcatgatctctcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 18098449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 23199274 - 23199373
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  23199274 catttccttttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 23199373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 32892121 - 32892023
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||||||| ||  ||||||||||||    
T  32892121 catttcctcttgaaacactaaggccttcact-ttttcatccgctctcaagtccttggacttggtcaactccttggttctcaaagccggttgaacttcttc 32892023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 43227156 - 43227057
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||| | ||||| | |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  43227156 cattccctcttgagacacttaggccttcaccgtgttcatgaactctcaagtccttggacttggtcaactccttggttctcaaagcctcttgaacttcttc 43227057  T

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Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 6717536 - 6717446
Alignment:
Q  378 ttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||| ||||||||||||  |||||||  |||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||    
T  6717536 ttgaaacactaaggccttcactgttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaagccacttgaacttcttc 6717446  T

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Target: chr3; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 375 - 468
Target Start/End: Complemental strand, 29811895 - 29811802
Alignment:
Q  375 ctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| ||| |||||||| ||| || |||||||||||||    
T  29811895 ctcttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactctttggttcttaaagccgcttgaacttcttc 29811802  T

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Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 4599855 - 4599954
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  4599855 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 4599954  T

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Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 468
Target Start/End: Original strand, 5259468 - 5259557
Alignment:
Q  379 tgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||| ||||| ||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  5259468 tgaaacactaaggtcttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 5259557  T

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Target: chr3; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 13967799 - 13967723
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttc 84  Q
    |||||||||||| ||| | ||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  13967799 agttttgcagaaagataaaacagcacaatcggttcctaagccttcctctcttgttcttgctcttcttctcccttttc 13967723  T

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Target: chr3; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 13973274 - 13973198
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttc 84  Q
    |||||||||||| ||| | ||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  13973274 agttttgcagaaagataaaacagcacaatcggttcctaagccttcctctcttgttcttgctcttcttctcccttttc 13973198  T

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Target: chr3; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 24122258 - 24122182
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttc 84  Q
    |||||||||||| ||||| ||||||| ||||||| |||| |||||| |||||||||||||||||||||||| |||||    
T  24122258 agttttgcagaaagattaaacagcacaatcggttcctaaaccctcccctcttgttcttgctcttcttctcccttttc 24122182  T

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Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 7769634 - 7769535
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||| ||||| | ||||||||||| ||||||| | ||||||||||||| ||||| | |  |||||||||||||||| ||||||||||||||||    
T  7769634 cattccctcttaaaacacttaggccttcaccgttttcatcatctctcaagtccttagactttgcctactccttggttctcaaagccacttgaacttcttc 7769535  T

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Target: chr3; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 10057277 - 10057178
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  |||||||||||||| |||||||||| |||||||||||| ||| || |||||||||||||    
T  10057277 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaagccgcttgaacttcttc 10057178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 10059499 - 10059400
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  |||||||||||||| |||||||||| |||||||||||| ||| || |||||||||||||    
T  10059499 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaagccgcttgaacttcttc 10059400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 10061721 - 10061622
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  |||||||||||||| |||||||||| |||||||||||| ||| || |||||||||||||    
T  10061721 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaagccgcttgaacttcttc 10061622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 10063943 - 10063844
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  |||||||||||||| |||||||||| |||||||||||| ||| || |||||||||||||    
T  10063943 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaagccgcttgaacttcttc 10063844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 10066165 - 10066066
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  |||||||||||||| |||||||||| |||||||||||| ||| || |||||||||||||    
T  10066165 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttagacttggtcaactccttggttcttaaagccgcttgaacttcttc 10066066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 10210233 - 10210134
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  ||||||||||| ||||||||||||| |||||||||||| ||| || |||||||||||||    
T  10210233 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtctttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 10210134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 37407721 - 37407622
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| ||| ||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| ||  ||||||||||||    
T  37407721 catttccttttgaaacactaaagccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccggttgaacttcttc 37407622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 464
Target Start/End: Original strand, 15830377 - 15830472
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaactt 464  Q
    |||| ||||||||| || | || |||||||| ||||||| ||||||||||||||||||||  || | |||||||||||||||| || |||||||||    
T  15830377 cattccctcttgaagcacttagaccttcaccgttttcatcagctctcaagtccttggactgtgttaactccttggttctcaaagccgcttgaactt 15830472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 5192684 - 5192630
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  5192684 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 5192630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 5192915 - 5192861
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  5192915 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 5192861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 6065017 - 6065071
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  6065017 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 6065071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 10957547 - 10957601
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  10957547 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 10957601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 467
Target Start/End: Complemental strand, 27421717 - 27421619
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttctt 467  Q
    |||| |||||||||||  | || |||| |||||||| || ||||||||| ||| | |||||||||| |||||||||||||||| || ||||||||||||    
T  27421717 cattccctcttgaaacgcttagacctttaccatttttatcagctctcaattcccttgacttggtcaactccttggttctcaaagccgcttgaacttctt 27421619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 9635281 - 9635358
Alignment:
Q  391 gccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||  |||||||  ||||||||||||||||||||||||| ||| |||||||| ||| || |||||||||||||    
T  9635281 gccttcactgttttcatccgctctcaagtccttggacttggtcaactcattggttcttaaagccgcttgaacttcttc 9635358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 411 - 468
Target Start/End: Original strand, 15821863 - 15821920
Alignment:
Q  411 ctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||    
T  15821863 ctctcaagtccttggactcggtcaactccttggttctcaaagccgcttgaacttcttc 15821920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 11169135 - 11169081
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| ||  ||||||||||||    
T  11169135 tcaagtccttggacttggtcaactccttggttctcaaaaccggttgaacttcttc 11169081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 456941 - 456887
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| ||| |||||||||||| || || ||||||||||    
T  456941 tcaagtccttggacttggtcaactcattggttctcaaagccgctcgaacttcttc 456887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 23634506 - 23634450
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttgg 425  Q
    ||||||||||||||||| | ||||||||||| ||||||| || ||||||||| ||||    
T  23634506 cattacctcttgaaacacttaggccttcaccgttttcatcagttctcaagtcattgg 23634450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1913 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold1913
Description:

Target: scaffold1913; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 936 - 1048
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||| |||    
T  936 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttctgactgtttttctttctttttctaactcccaaaa 1035  T
Q  152 ctataacttccct 164  Q
    |||||||| ||||    
T  1036 ctataactcccct 1048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 5154 - 5047
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||| |||    
T  5154 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttctgactgtttttctttctttttctaactcccaaaa 5055  T
Q  152 ctataact 159  Q
    ||||||||    
T  5054 ctataact 5047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 11851 - 11696
Alignment:
Q  8 agttttgcagaatgattacacagcacga-tcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagc-tagttttctta 105  Q
    |||||||||||| ||||| || ||| || |||||||||| || ||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||    
T  11851 agttttgcagaaagattatactgcatgaatcggtttctaggctctcctctcttgctctggctcttcttctcccttttctcccaaaagcttagttttctta 11752  T
Q  106 cgttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccc 163  Q
    | | | ||||| ||||||||||||| ||||||||||||||||   |||||||||||||    
T  11751 cataaaaacgttctgactgtttttctttctttttctaactcc--tactataacttccc 11696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 8045801 - 8045695
Alignment:
Q  41 ttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttc 140  Q
    ||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||     
T  8045801 ttctaggctctcatctcttgttcttgctcttcttctcccttttctcccaaaagctagttttcttacgttcaaacgttctgactgtttttctttcttttt- 8045703  T
Q  141 taactccc 148  Q
    ||||||||    
T  8045702 taactccc 8045695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 12740868 - 12740967
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  12740868 catttcctcttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 12740967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 12749074 - 12749173
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||||||||||  |||||||   |||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  12749074 catttcctcttgaaacactaaggccttcactgttttcatccactctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 12749173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 8394441 - 8394351
Alignment:
Q  378 ttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  8394441 ttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 8394351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 52094504 - 52094597
Alignment:
Q  375 ctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||| ||||||||||||  |||||||  ||||||||||| ||||||||||||| |||||||||||| ||| || |||||||||||||    
T  52094504 ctcttgaaacactaaggccttcactgttttcatccgctctcaagtcattggacttggtcaactccttggttcttaaagccgcttgaacttcttc 52094597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 5137124 - 5137025
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||  |||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  5137124 catttccttttgacacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 5137025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 12402275 - 12402374
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | |||||||||||||||||||||  | | || |||||||||||||||| || |||||||||||||||| |||||||||||||    
T  12402275 cattccctcttgagacatttaggccttcaccattttcataaaatatgaaatccttggacttggtcaacttcttggttctcaaatccgcttgaacttcttc 12402374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 374 - 465
Target Start/End: Complemental strand, 4588978 - 4588888
Alignment:
Q  374 cctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttc 465  Q
    |||||||||||| ||||| |||||| ||||||||   |||||||||| ||||||||||||| |||||||||||||||| || ||||||||||    
T  4588978 cctcttgaaacactaaggtcttcactattttcatcc-ctctcaagtctttggacttggtcaactccttggttctcaaagccgcttgaacttc 4588888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 7123740 - 7123641
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||| ||| ||||||||||||   ||||||  ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  7123740 catttccttttgacacactaaggccttcactgctttcatccgctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 7123641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 464
Target Start/End: Original strand, 12400000 - 12400095
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaactt 464  Q
    |||| |||||||| ||| | ||||||||||| |||||||||  ||||||||||||||||||||||| || | ||||||||||| || |||||||||    
T  12400000 cattccctcttgagacatttaggccttcaccgttttcataaattctcaagtccttggacttggtcaacttcctggttctcaaagccgcttgaactt 12400095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 26558741 - 26558642
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| | ||| ||||||  ||||||| | |||||||||||||||||||||||| ||||||||||||||||  |  ||||||||||||    
T  26558741 cattccctcttgaaacacttaggtcttcactgttttcatcaactctcaagtccttggacttggtcaactccttggttctcaaagtcgtttgaacttcttc 26558642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 11007792 - 11007846
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  11007792 tcaagtccttggacttagtcaactccttggttctcaaagccacttgaacttcttc 11007846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 16933372 - 16933426
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  16933372 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 16933426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 22045939 - 22045993
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  22045939 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 22045993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 22781961 - 22782015
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  22781961 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 22782015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 478
Target Start/End: Original strand, 9175696 - 9175760
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttctatggtagca 478  Q
    ||||||||||||||||||||| ||||||| |||||||| || ||||||||||||| | |||||||    
T  9175696 tcaagtccttggacttggtcaactccttgattctcaaagccgcttgaacttcttccaaggtagca 9175760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 11848200 - 11848306
Alignment:
Q  41 ttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagc-tagttttcttacgt-tacaacgtgctgactgtttttccttctttt 138  Q
    ||||| || ||||||||| | ||| ||||||||||||| ||||||||||||||| || | |||||||||  | |||||  |||||||||||| |||||||    
T  11848200 ttctaggctctcctctctagctctggctcttcttctcccttttctcccaaaagcttaatgttcttacgtaaaaaacgttttgactgtttttctttctttt 11848299  T
Q  139 tctaact 145  Q
    |||||||    
T  11848300 tctaact 11848306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 22133841 - 22133895
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| || ||||||||||||| || |||||||||||||    
T  22133841 tcaagtccttggacttggtcaactgcttggttctcaaagccgcttgaacttcttc 22133895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 5206798 - 5206877
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccatttt-cataagctctcaagtccttggacttggtcagctccttggttct 447  Q
    |||| |||||||||||  | |||||||||| ||||| |||  ||||||||||||||||||||||||| || |||||||||    
T  5206798 cattccctcttgaaacgcttaggccttcactatttttcattcgctctcaagtccttggacttggtcaacttcttggttct 5206877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 15956 - 16063
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactc-ccaaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||| | ||||| ||||||||||||| ||||||||||||||| | |||    
T  15956 ctctcttgttcttgcttttcctctcccttttctcccaaaagctatttttcttacgtaaaaacgttctgactgtttttctttctttttctaactctcaaaa 16055  T
Q  152 ctataact 159  Q
    ||||||||    
T  16056 ctataact 16063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 10371 - 10468
Alignment:
Q  73 ttctccattttctcccaaaagctagtttt-cttacgttacaacgtgctgactgtttttccttctttttctaactcccaaactataacttccctatttc 169  Q
    |||||| |||||||||||||||||||||| ||||||||| || || | ||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  10371 ttctcccttttctcccaaaagctagtttttcttacgttaaaatgttcagactgtttttctttcttttcctaactcccaaactataacttccctatttc 10468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 1264 - 1359
Alignment:
Q  41 ttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttcttt 137  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||  |||||||||||||||||||    
T  1264 ttctaggctctcctctcttgttcttgctcttcttctcccttttctccc-aaagctagttttcttacgtaaaaacgttttgactgtttttccttcttt 1359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 50265 - 50360
Alignment:
Q  41 ttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttcttt 137  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||  |||||||||||||||||||    
T  50265 ttctaggctctcctctcttgttcttgctcttcttctcccttttctccc-aaagctagttttcttacgtaaaaacgttttgactgtttttccttcttt 50360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 3244 - 3138
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | |||||  |||||| ||||| ||||||||||||||||| |||    
T  3244 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttatgactg-ttttctttctttttctaactcccaaaa 3146  T
Q  152 ctataact 159  Q
    ||||||||    
T  3145 ctataact 3138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 3573 - 3467
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctttttctaactccc-aaa 151  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| | |||||  |||||| ||||| ||||||||||||||||| |||    
T  3573 ctctcttgttcttgcttttcctctcccttttctcccaaaagctagttttcttacgtaaaaacgttatgactg-ttttctttctttttctaactcccaaaa 3475  T
Q  152 ctataact 159  Q
    ||||||||    
T  3474 ctataact 3467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 13126916 - 13127015
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| | | ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| |  |||||||||||||    
T  13126916 cattccctcttgaaacacttacgccttcaccattttcatcagctctcaagtccttggatttggtcaactccttggttctcaaagctgcttgaacttcttc 13127015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 369 - 470
Target Start/End: Original strand, 3805310 - 3805411
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| | | ||||||||||||||||| || ||||||||| | ||||||||||| |||||||||||||||| || |||||||||||||    
T  3805310 cattccctcttgaaacactcaagccttcaccattttcatcagttctcaagtcataggacttggtcaactccttggttctcaaagccgcttgaacttcttc 3805409  T
Q  469 ta 470  Q
    ||    
T  3805410 ta 3805411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 31658236 - 31658137
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||||||||||  |||||||  |||||||||||||||||||||||||  ||||||||||| ||| || |||||||||||||    
T  31658236 catttcctcttgaaacactaaggccttcactgttttcatccgctctcaagtccttggacttggtcaattccttggttcttaaagccgcttgaacttcttc 31658137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 28222557 - 28222656
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||||||| ||||||||||||  |||||||  ||||||||||| ||||||||||||| |||||||||||| ||| || | |||||||||||    
T  28222557 catttcctcttgaaacactaaggccttcactgttttcatccgctctcaagtctttggacttggtcaactccttggttcttaaagccgcctgaacttcttc 28222656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 50168486 - 50168585
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||||||||||||  |||||||||||  |||||||  ||||||||||| ||||||||| ||| |||||||||||||||| ||  ||||||||||||    
T  50168486 catttcctcttgaaacacaaaggccttcactgttttcatttgctctcaagtcattggacttgatcaactccttggttctcaaagccgtttgaacttcttc 50168585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 451
Target Start/End: Complemental strand, 776105 - 776023
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaa 451  Q
    |||| ||||||||||||  |||||||||||  |||||||  ||||||||||||||||||||||||| || |||||||||||||    
T  776105 catttcctcttgaaacacaaaggccttcactgttttcattcgctctcaagtccttggacttggtcaacttcttggttctcaaa 776023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 28841519 - 28841423
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||| | ||||| ||   ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  28841519 cattccctcttgagacacttaggccttcaccgtgttcatgag---tcaagtccttggacttggtcaactccttggttctcaaagcctcttgaacttcttc 28841423  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 27338312 - 27338411
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||| | ||| | |  ||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||    
T  27338312 cattccctcttgagacacttaggccttcaccgtgttcttgaattctcaagtctttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 27338411  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 16227223 - 16227169
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  16227223 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 16227169  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 47178417 - 47178363
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  47178417 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 47178363  T

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Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 51751092 - 51751038
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  51751092 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 51751038  T

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Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 20301228 - 20301132
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||| | ||||| ||   |||||||||||||||||||||  ||||||||||||||| || |||||||||||||    
T  20301228 cattccctcttgagacacttaggccttcaccgtgttcatgag---tcaagtccttggacttggtcaattccttggttctcaaagccgcttgaacttcttc 20301132  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 461
Target Start/End: Original strand, 28202879 - 28202971
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaa 461  Q
    |||| |||||||| ||| | ||||||||||| | ||||| |  |||||||| |||||||||||||| |||||||||||||||| || ||||||    
T  28202879 cattccctcttgagacacttaggccttcaccgtgttcatgaattctcaagttcttggacttggtcaactccttggttctcaaagccgcttgaa 28202971  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 8348250 - 8348349
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| | ||||||||||  ||||||  | || |||||| |||||||||||| | |||||||||||||||| || |||||||||||||    
T  8348250 catttccttttgaaacacttaggccttcactgttttcaccaactatcaagttcttggacttggttaactccttggttctcaaagccgcttgaacttcttc 8348349  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 468
Target Start/End: Original strand, 45654851 - 45654942
Alignment:
Q  376 tcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||||| ||| || ||||||||| ||||  ||||||| ||||| | ||||| | | |||||||||||||||| ||  ||||||||||||    
T  45654851 tcttgaaacactaaagctttcaccattatcatcggctctcatgtcctag-acttgattaactccttggttctcaaagccttttgaacttcttc 45654942  T

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Target: scaffold0247 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 11396 - 11497
Alignment:
Q  8 agttttgcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagc-tagttttcttac 106  Q
    |||||||||||| ||||||||||||  ||||||| ||| || || |||||||||||||||||||||||||| ||||||||||||| | ||||||||||||    
T  11396 agttttgcagaaggattacacagcaaaatcggttcctaggctcttctctcttgttcttgctcttcttctcccttttctcccaaaaacttagttttcttac 11495  T
Q  107 gt 108  Q
    ||    
T  11496 gt 11497  T

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Target: scaffold0117 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 8530 - 8452
Alignment:
Q  56 tcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttct 135  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  8530 tcttgttcttgctcttcttctcccttttctcccaaaagctag-tttcttacgttaaaacgttctgactgtttttctttct 8452  T

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Target: scaffold0117; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 1853 - 1775
Alignment:
Q  56 tcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttct 135  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||| |||||| ||||    
T  1853 tcttgttcttgctcttcttctcccttttctcccaaaagctag-tttcttacgttaaaacgttctgactatttttctttct 1775  T

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Target: scaffold0025 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Original strand, 72696 - 72795
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||| | ||||| | |||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  72696 cattccctcttgagacacttaggccttcaccgtgttcatgaactctcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 72795  T

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Target: scaffold0011 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 34655 - 34556
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| |||||||| ||| | ||||||||||| | ||||| | |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||    
T  34655 cattccctcttgagacacttaggccttcaccgtgttcatgaactctcaagtccttggacttggtcaaccccttggttctcaaagccacttgaacttcttc 34556  T

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Target: scaffold0011; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 153342 - 153457
Alignment:
Q  14 gcagaatgattacacagcacgatcggtttctaagccctcctctcttgttcttgctcttcttctccattttctcccaaaagc-tagttttcttacgttaca 112  Q
    |||||| |||| || ||||  ||||||| ||| || ||||||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||| | |    
T  153342 gcagaaagattgcatagcaaaatcggttcctaggctctcctctcttgtttttgctcttcctctcccttttctcccaaaagcttagttttcttacgtaaaa 153441  T
Q  113 acgtgctgactgtttt 128  Q
    |||| |||||| ||||    
T  153442 acgttctgactctttt 153457  T

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Target: scaffold0091 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 1644 - 1725
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttct 135  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| | ||||||||||||| ||||    
T  1644 ctctcttgttcttgctcttcttctcccttttctcccaaaagctag-tttcttacgttaaaacattctgactgtttttctttct 1725  T

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Target: scaffold0029 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 111979 - 112064
Alignment:
Q  52 cctctcttgttcttgctcttcttct-ccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttcttt 137  Q
    ||||||||||||||||||||||||| || ||||||||| |||||||| |||||||||||| ||||| ||||||||||||| ||||||    
T  111979 cctctcttgttcttgctcttcttctccctttttctccccaaagctag-tttcttacgttaaaacgttctgactgtttttctttcttt 112064  T

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Target: scaffold0029; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 116882 - 116965
Alignment:
Q  52 cctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttctt 136  Q
    |||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||| | ||||| ||||||||||||| |||||    
T  116882 cctctcttgttcttgcccttcttctcccttttctccccaaagctag-tttcttacgtcaaaacgttctgactgtttttctttctt 116965  T

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Target: scaffold0016 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 468
Target Start/End: Complemental strand, 115635 - 115536
Alignment:
Q  369 cattacctcttgaaacagtaaggccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||| ||| |||||||| |||||||||||   |||||||   |||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||    
T  115635 catttccttttgaaacactaaggccttcattgttttcatcctctctcaagtccttggacttggtcaactccttggttcttaaagccgcttgaacttcttc 115536  T

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Target: scaffold0140 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 23181 - 23127
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  23181 tcaagtccttggacttggtcaactccttggttctcaaagccgcttgaacttcttc 23127  T

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Target: scaffold0924 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 707 - 624
Alignment:
Q  53 ctctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacgtgctgactgtttttccttcttt 137  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| | || ||  |||||||||| | ||||||    
T  707 ctctcttgttcttgctcttcttctcccttttctccccaaagctag-tttcttacgtaaaaatgttttgactgttttcctttcttt 624  T

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Target: scaffold1899 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 679 - 625
Alignment:
Q  414 tcaagtccttggacttggtcagctccttggttctcaaatccacttgaacttcttc 468  Q
    |||||||||| |||||||||| |||||||||||||||| || |||||||||||||    
T  679 tcaagtcctttgacttggtcaactccttggttctcaaagccgcttgaacttcttc 625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 26575 - 26642
Alignment:
Q  392 ccttcaccattttcataagctctcaagtccttggacttggtcagctccttggttctcaaatccacttg 459  Q
    ||||||| |||||||| | || |||||||||||||||| || | ||||||||||||||||||| ||||    
T  26575 ccttcactattttcatcatctatcaagtccttggacttagttaactccttggttctcaaatccgcttg 26642  T

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Target: scaffold2054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 814 - 896
Alignment:
Q  55 ctcttgttcttgctcttcttctccattttctcccaaaagctagttttcttacgttacaacg-tgctgactgtttttccttcttt 137  Q
    ||||||||||||||| |||||||| ||||||| | |||||||| |||||||||| | |||| |  |||||||||||| ||||||    
T  814 ctcttgttcttgctcctcttctcccttttctctccaaagctag-tttcttacgtaaaaacgtttttgactgtttttctttcttt 896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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