View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4398_high_13 (Length: 225)
Name: NF4398_high_13
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 201837 - 201898
Alignment:
| Q |
149 |
gaatgttgggcttaatgattttttcaagagtcaaattcatctataattaatgttgtactaaa |
210 |
Q |
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| T |
201837 |
gaatgttgggcttaatgattttttcaagagtcaaattcttctataattaatgttgtactaaa |
201898 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 201703 - 201755
Alignment:
| Q |
15 |
aatactgcaggataagaataaatgaacattcgactcgatctccccgcagccag |
67 |
Q |
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| T |
201703 |
aatactgcaggataagaataaatgaacattcaactcgatctccccgcaaccag |
201755 |
T |
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