View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4398_high_4 (Length: 446)
Name: NF4398_high_4
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 214 - 444
Target Start/End: Original strand, 32604488 - 32604718
Alignment:
| Q |
214 |
attaaaattaaatattaaagactaatttcattttgtctgattctaatctctatcaataattcaacatcattgaaagagacacaaaaagaggaagaaaatg |
313 |
Q |
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| T |
32604488 |
attaaaattaaatattaaagactaatttcattttgtccgattctaatctctatcaataattcaacatcattgaaagagacacaaaaagaggaagaaaatg |
32604587 |
T |
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| Q |
314 |
atcgaggaaggtacctttcgagcacaagagcgaaaggagtaattataattgcggccacaacatgacggtacacggagagaatccaatggctcataccatg |
413 |
Q |
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| T |
32604588 |
atcgaggaaggtacctttcgagcacaagagcgaaaggagtaattataattgcggccacaacatgacggtacacggagagaatccaatggctcataccatg |
32604687 |
T |
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| Q |
414 |
tttgaaagaaaccatagtgatgatgtccatc |
444 |
Q |
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| T |
32604688 |
tttgaaagaaaccatagtaatgatgtacatc |
32604718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 32604294 - 32604430
Alignment:
| Q |
20 |
ccttactcaaggaaaccaagtgccactatcctcaggaagatggggagagtcatctttggccttgtttttctgtaaagataaataattaaaacaaaatctt |
119 |
Q |
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| T |
32604294 |
ccttactcaaggaaaccaagtgccactatcctcaggaagatggggagagtcatctttggccttgtttttctgtaaagataaataattaaaacaaaatctt |
32604393 |
T |
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| Q |
120 |
gttaagcttatgaagacaaagtatatagtagctacac |
156 |
Q |
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| T |
32604394 |
gttaagcttatgaagacaaagtatatagtagctacac |
32604430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 439
Target Start/End: Original strand, 10605241 - 10605308
Alignment:
| Q |
372 |
aacatgacggtacacggagagaatccaatggctcataccatgtttgaaagaaaccatagtgatgatgt |
439 |
Q |
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| T |
10605241 |
aacatgacggtacacagagagtacccaatgactcatgccatgcttgaatgaaaccatagtgatgatgt |
10605308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 10604661 - 10604736
Alignment:
| Q |
20 |
ccttactcaaggaaaccaagtgccactatcctcaggaagatggggagagtcatctttggccttgtttttctgtaaa |
95 |
Q |
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| T |
10604661 |
ccttactcaaggaaaccaagaaccgctagcctcaaaaagatagggagtgtcatctttggcctaatttttctgtaaa |
10604736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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