View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4398_high_5 (Length: 438)
Name: NF4398_high_5
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 63 - 430
Target Start/End: Original strand, 9466711 - 9467072
Alignment:
| Q |
63 |
gtagggttatgtgcgaatgacagaagggattgcttgtgtacccactcatccaaagaataaacaggtataagaggaaaaacaatacatttgtacctaaatt |
162 |
Q |
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| T |
9466711 |
gtagggttatgtgcgaatgacagaagggattgcttgtgtacccactcatccaaagaataaacagg------aggaaaaacaatacatttgtacctaaatt |
9466804 |
T |
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| Q |
163 |
aatgcatgtgcataatcttattgctttattcattcatatatattaatgatttgcaaaaaatatcataactattcttttttaaaatagtaatttatttatc |
262 |
Q |
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| T |
9466805 |
aatgcatgtgcataatcttattgctttattcattcatatatattaatgatttgcaaaaaatatcataactattcttttttaaaatagtaatttatttatc |
9466904 |
T |
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| Q |
263 |
atgaatcattttgcat---cnnnnnnnntcaaatcatttacnnnnnnnnnnnnnaaggaaatcattaacttcttaactaattattatggtcagattttgt |
359 |
Q |
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| T |
9466905 |
atgaatcattttgcataaaaaaaaaaaatcaaatcatttac---ttttttttttaaggaaatcattaacttcttaactaattattatggtcagattttgt |
9467001 |
T |
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| Q |
360 |
ttttaacaccataaaggccagaaattttaattctggatgatgatcagaatgggaaaaaatatatattgatg |
430 |
Q |
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| T |
9467002 |
ttttaacaccataaaggccagaaattttaattctggatgatgatcagaatgggaaaaaatatatattgatg |
9467072 |
T |
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